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Expression of 1-1-7.4.14.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.06940.997
27DAP/17DAP1.541550.552
39DAP/27DAP2.30430.028
41DAP/39DAP0.959950.83
42DAP/41DAP2.03830.122
43DAP/42DAP2.152150.375
47DAP/43DAP0.75490.298
52DAP/47DAP0.76980.459
57DAP/52DAP1.105490.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.790360.049
17DAP/reference0.856740.085
27DAP/reference1.180890.093
39DAP/reference1.259990.031
41DAP/reference0.90720.201
42DAP/reference1.614690.002
43DAP/reference1.295950.012
47DAP/reference1.903250.01
52DAP/reference1.184010.229
57DAP/reference1.224330.021

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.051820.728
27DAP/17DAP1.324290.073
39DAP/27DAP2.660150.032
41DAP/39DAP0.427140.016
42DAP/41DAP2.173270.002
43DAP/42DAP4.332830.013
47DAP/43DAP0.920070.506
52DAP/47DAP1.100090.734
57DAP/52DAP0.926050.541
57DAP/7DAP6.944510.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.592390.058
17DAP/reference0.527850.011
27DAP/reference0.659680.01
39DAP/reference0.867890.043
41DAP/reference0.773350.049
42DAP/reference1.178060.174
43DAP/reference1.344090.157
47DAP/reference1.3050.073
52DAP/reference0.92620.278
57DAP/reference1.041040.907

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.735940.069
17DAP/reference0.982740.594
27DAP/reference1.052940.781
39DAP/reference0.906270.221
41DAP/reference0.911940.137
42DAP/reference1.082320.488
43DAP/reference0.823490.062
47DAP/reference1.174050.108
52DAP/reference0.751930.016
57DAP/reference0.799130.035

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.5060.034
17DAP/reference0.772060.177
27DAP/reference0.730390.029
39DAP/reference0.921010.179
41DAP/reference0.946130.417
42DAP/reference2.918290.007
43DAP/reference2.845650.006
47DAP/reference2.096030.005
52DAP/reference2.781860.03
57DAP/reference1.466050.023

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.858970.841
26DAP/20DAP0.946561
34DAP/26DAP0.804940.712
51DAP/34DAP0.882780.419
52DAP/51DAP0.765990.151
53DAP/52DAP1.029081
55DAP/53DAP0.978690.709
57DAP/55DAP1.069290.854
62DAP/57DAP0.771480.016
68DAP/62DAP0.92670.747
68DAP/14DAP1.31160.103

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker24.91980.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.516160.115
Mature Green Tomato/Ripe Tomato0.443340.024
Immature Eggplant/Mature Eggplant0.525060.063
Ripe Pepper/Ripe Tomato0.713890.293
Mature Eggplant/Ripe Tomato0.294910.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.141970.742
1-1-2/M821.314581
12-2/M820.977290.955
12-4/M821.538181
1-3/M821.953520.26
2-1-1/M820.715050.465
2-1/M820.546190.345
2-6/M821.290590.505
3-2/M821.031180.967
4-1-1/M821.107231
4-1/M821.582121
4-3-2/M821.426360.253
4-3/M821.640770.268
5-3/M820.984651
6-2/M821.179871
6-3/M820.988841
7-1/M820.804050.803
7-2/M821.397150.324
9-3-2/M821.403061

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.93250.321
IL2-6/WTpooled0.834591
IL7-5/WTpooled0.982271
IL7-3/WTpooled0.901051
IL12-4/WTpooled0.982931
IL1-4/WTpooled0.995551
WT/WTpooled1.106811

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.966931

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.872340.941
DC3000/delta hrp 6h1.139921
DC3000/delta hrp 12h0.959411
DC3000/delta hrp 24h0.88930.252

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.06433N/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.969541
Exp 36h0.899590.879
Exp 60h0.695980.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001911
Var 0h1.131360.936
Var 12h I row2-row10.986411
Var 12h NI row2-row11.033391
Var 36h I row2-row10.803781
Var 36h NI row2-row11.009121
Var 60h I row2-row10.941260.952
Var 60h NI row2-row10.84440.38
Time course 0hI-0hNI1.049160.799
Time course 12hI-12hNI0.9951
Time course 36hI-36hNI1.08490.056
Time course 60hI-60hNI1.029170.302

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.96230.409
transgenic ySAMdc/azygous control (breaker)0.989631
transgenic ySAMdc/azygous control (red)1.004321

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.999930.967

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.650620.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.683630.083
Manapal/WT (break)0.933371
Manapal/WT (red)0.894630.36