Tomato Functional Genomics Database (TFGD)

Expression of 1-1-7.4.2.20

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.38222	0.428
27DAP/17DAP	0.73202	0.456
39DAP/27DAP	0.87749	0.512
41DAP/39DAP	0.95218	0.819
42DAP/41DAP	1.27773	0.712
43DAP/42DAP	0.87625	0.801
47DAP/43DAP	1.41454	0.438
52DAP/47DAP	0.9424	0.854
57DAP/52DAP	1.04879	0.992

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.92048	0.55
17DAP/reference	N/A	N/A
27DAP/reference	0.69099	0.24
39DAP/reference	0.85499
41DAP/reference	1.04182	0.667
42DAP/reference	1.60062	0.012
43DAP/reference	0.58038
47DAP/reference	1.34962	0.022
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.68646
27DAP/17DAP	1.24826	1
39DAP/27DAP	1.6344
41DAP/39DAP	0.51475
42DAP/41DAP	1.23104	0.763
43DAP/42DAP	1.15729	0.788
47DAP/43DAP	0.5566	0.05
52DAP/47DAP	1.34011	0.289
57DAP/52DAP	0.89263	0.742
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.69965	0.108
17DAP/reference	0.85949	0.02
27DAP/reference	0.7834	0.03
39DAP/reference	1.08543	0.601
41DAP/reference	1.07528	0.507
42DAP/reference	1.02312	0.612
43DAP/reference	1.0549	0.672
47DAP/reference	1.00474	1
52DAP/reference	0.97256	0.523
57DAP/reference	1.22653	0.137

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.68173	0.069
17DAP/reference	1.346
27DAP/reference	0.83522	0.423
39DAP/reference	0.61629	0.064
41DAP/reference	0.62584
42DAP/reference	2.0293
43DAP/reference	0.65331	0.147
47DAP/reference	1.43267
52DAP/reference	1.63805
57DAP/reference	1.03157

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.79984	0.197
17DAP/reference	0.67275	0.262
27DAP/reference	1.01725
39DAP/reference	N/A	N/A
41DAP/reference	0.90243	0.371
42DAP/reference	1.79175	0.566
43DAP/reference	1.29465
47DAP/reference	0.38955
52DAP/reference	0.85115	0.376
57DAP/reference	0.66547

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.87951	1
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.52124	1
51DAP/34DAP	1.77915	0.339
52DAP/51DAP	0.75998	1
53DAP/52DAP	2.10292	0.444
55DAP/53DAP	1.51775	0.444
57DAP/55DAP	N/A	N/A
62DAP/57DAP	N/A	N/A
68DAP/62DAP	2.8347	0.053
68DAP/14DAP	1.40067

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.9463	0.52

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	0.79232
IL7-3/WTpooled	0.93876	1
IL12-4/WTpooled	0.79096	1
IL1-4/WTpooled	1.18586	1
WT/WTpooled	0.98039	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.99117
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	0.97882	1
Manapal/WT (red)	N/A	N/A