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Expression of 1-1-7.4.3.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.707790.083
27DAP/17DAP0.866580.649
39DAP/27DAP1.314620.755
41DAP/39DAP0.974240.839
42DAP/41DAP1.141660.929
43DAP/42DAP0.882060.77
47DAP/43DAP1.023880.979
52DAP/47DAP1.135170.861
57DAP/52DAP0.831390.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.118170.116
17DAP/reference1.17270.384
27DAP/reference1.424670.058
39DAP/reference1.160890.691
41DAP/reference0.986010.814
42DAP/reference1.26820.002
43DAP/reference1.20271N/A
47DAP/reference1.182210.085
52DAP/reference1.197030.524
57DAP/reference0.426660.021

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.660920.032
27DAP/17DAP1.073580.775
39DAP/27DAP1.000551
41DAP/39DAP0.946070.822
42DAP/41DAP1.098450.478
43DAP/42DAP1.159010.017
47DAP/43DAP1.009950.969
52DAP/47DAP0.99460.959
57DAP/52DAP0.877260.304
57DAP/7DAP0.812781

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.892950.246
17DAP/reference0.965920.389
27DAP/reference1.227990.035
39DAP/reference0.805090.017
41DAP/reference0.89110.103
42DAP/reference1.282430.011
43DAP/reference0.993930.637
47DAP/reference0.942240.383
52DAP/reference0.959010.332
57DAP/reference0.854370.029

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.334850.094
17DAP/reference1.301230.065
27DAP/reference1.411250.111
39DAP/reference1.491080.042
41DAP/reference1.154920.471
42DAP/reference1.464360.02
43DAP/reference1.752660.056
47DAP/reference1.245310.021
52DAP/reference1.288850.279
57DAP/reference1.184490.2

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.973140.526
17DAP/reference1.085770.712
27DAP/reference0.829330.048
39DAP/reference0.898350.083
41DAP/reference1.249390.471
42DAP/reference1.305650.044
43DAP/reference1.210280.565
47DAP/reference1.052120.372
52DAP/reference1.108120.357
57DAP/reference1.504940.118

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.068990.966
26DAP/20DAP1.234740.663
34DAP/26DAP0.855850.771
51DAP/34DAP1.060070.949
52DAP/51DAP0.868951
53DAP/52DAP0.975010.882
55DAP/53DAP0.896820.325
57DAP/55DAP1.344550.086
62DAP/57DAP0.863440.028
68DAP/62DAP0.780690.378
68DAP/14DAP0.777780.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.75370.018

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.295630.068
Mature Green Tomato/Ripe Tomato0.603880.02
Immature Eggplant/Mature Eggplant1.522260.05
Ripe Pepper/Ripe Tomato0.458930.224
Mature Eggplant/Ripe Tomato0.652361

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.145930.877
1-1-2/M821.204861
12-2/M821.000271
12-4/M821.234891
1-3/M821.154921
2-1-1/M821.13949N/A
2-1/M821.121490.335
2-6/M821.016131
3-2/M821.087230.717
4-1-1/M820.928471
4-1/M821.2979N/A
4-3-2/M821.495630.246
4-3/M821.508090.268
5-3/M820.973071
6-2/M820.92526N/A
6-3/M821.006661
7-1/M821.125511
7-2/M821.078190.385
9-3-2/M821.298881

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.791890.243
IL2-6/WTpooled0.905221
IL7-5/WTpooled1.386850.792
IL7-3/WTpooled0.884251
IL12-4/WTpooled1.174050.557
IL1-4/WTpooled1.247371
WT/WTpooled1.012391

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.222140.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.007811
DC3000/delta hrp 6h1.062491
DC3000/delta hrp 12h1.099421
DC3000/delta hrp 24h1.001281

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.322270.27
DC3000 delta B/DC3000 delta AB1.131150.389

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.032811
Exp 36h1.153641
Exp 60h1.232230.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025911
Var 0h1.034921
Var 12h I row2-row10.676940.338
Var 12h NI row2-row10.911310.466
Var 36h I row2-row10.928511
Var 36h NI row2-row11.223030.482
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.069280.904
Time course 0hI-0hNI1.055480.662
Time course 12hI-12hNI1.030790.777
Time course 36hI-36hNI0.934710.095
Time course 60hI-60hNI0.128050.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.105830.511
transgenic ySAMdc/azygous control (breaker)0.967981
transgenic ySAMdc/azygous control (red)1.121040.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.092890.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.520160.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.991851
Manapal/WT (break)0.776640.333
Manapal/WT (red)0.608130.181