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Expression of 1-1-7.4.6.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.070690.947
27DAP/17DAP1.222720.905
39DAP/27DAP2.84010.025
41DAP/39DAP0.944950.748
42DAP/41DAP1.591080.449
43DAP/42DAP0.867610.787
47DAP/43DAP1.020070.746
52DAP/47DAP1.12180.953
57DAP/52DAP1.191870.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.94260.39
17DAP/reference1.05850.528
27DAP/reference0.928740.525
39DAP/reference1.055520.465
41DAP/reference1.094050.221
42DAP/reference0.945510.202
43DAP/reference1.060760.495
47DAP/reference1.053340.404
52DAP/reference0.883740.049
57DAP/reference0.913610.131

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.168550.241
27DAP/17DAP1.00040.969
39DAP/27DAP1.098130.659
41DAP/39DAP1.103790.773
42DAP/41DAP1.019021
43DAP/42DAP1.199050.273
47DAP/43DAP1.172950.5
52DAP/47DAP0.937310.729
57DAP/52DAP1.544270.173
57DAP/7DAP1.418170.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.908410.27
17DAP/reference0.975980.518
27DAP/reference1.141180.371
39DAP/reference1.026431
41DAP/reference1.111760.678
42DAP/reference0.970110.482
43DAP/reference1.130530.14
47DAP/reference0.94050.383
52DAP/reference1.210120.092
57DAP/reference1.18290.1

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.88210.182
17DAP/reference0.889290.05
27DAP/reference0.933290.249
39DAP/reference1.06580.62
41DAP/reference0.87750.096
42DAP/reference0.991050.594
43DAP/reference0.842560.175
47DAP/reference0.85960.11
52DAP/reference0.962450.433
57DAP/reference1.038190.827

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.96730.526
17DAP/reference0.855170.398
27DAP/reference1.04801N/A
39DAP/reference0.997111
41DAP/reference1.129610.657
42DAP/reference1.125940.6
43DAP/reference1.227170.179
47DAP/reference1.000570.754
52DAP/reference1.074680.801
57DAP/reference1.135040.223

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.940851
26DAP/20DAP2.09543N/A
34DAP/26DAP1.094031
51DAP/34DAP1.480730.051
52DAP/51DAP0.734531
53DAP/52DAP1.269040.58
55DAP/53DAP0.963150.761
57DAP/55DAP1.146010.682
62DAP/57DAP0.885730.466
68DAP/62DAP0.59040.227
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.670480.03

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.651820.026
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.175641
Mature Eggplant/Ripe Tomato0.919251

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.040981
1-1-2/M821.222541
12-2/M821.0276N/A
12-4/M821.021551
1-3/M821.816390.479
2-1-1/M821.216570.764
2-1/M820.799680.322
2-6/M820.853580.501
3-2/M820.981761
4-1-1/M820.932141
4-1/M82N/AN/A
4-3-2/M821.08511
4-3/M821.135341
5-3/M820.982381
6-2/M821.00066N/A
6-3/M821.077731
7-1/M820.87936N/A
7-2/M821.127571
9-3-2/M821.124751

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.86764N/A
IL12-4/WTpooled0.9841
IL1-4/WTpooled1.09517N/A
WT/WTpooled1.151731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.241130.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.271730.894
DC3000/delta hrp 6h0.68839N/A
DC3000/delta hrp 12h0.939921
DC3000/delta hrp 24h1.108980.192

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.61098N/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.105891
Exp 36h0.770290.82
Exp 60h1.094110.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.808311
Var 0h0.999551
Var 12h I row2-row10.885920.338
Var 12h NI row2-row11.1721N/A
Var 36h I row2-row11.276941
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row10.726040.374
Var 60h NI row2-row10.895841
Time course 0hI-0hNI0.977550.936
Time course 12hI-12hNI1.030970.785
Time course 36hI-36hNI2.142060.006
Time course 60hI-60hNI5.25350.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.012730.798
transgenic ySAMdc/azygous control (breaker)1.305720.166
transgenic ySAMdc/azygous control (red)1.054040.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.008390.556

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.269420.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.226060.413