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Expression of 1-1-7.4.8.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.962830.743
27DAP/17DAP1.17650.813
39DAP/27DAP0.811570.378
41DAP/39DAP1.304510.212
42DAP/41DAP1.208730.971
43DAP/42DAP0.996410.931
47DAP/43DAP0.922720.699
52DAP/47DAP1.027791
57DAP/52DAP1.098280.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.924580.254
17DAP/reference1.023620.492
27DAP/reference1.003471
39DAP/reference1.001010.941
41DAP/reference1.16140.017
42DAP/reference0.895630.027
43DAP/reference1.068510.202
47DAP/reference0.902150.065
52DAP/reference0.782630.018
57DAP/reference0.827440.056

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.882460.388
27DAP/17DAP1.030771
39DAP/27DAP1.0760.532
41DAP/39DAP0.955950.923
42DAP/41DAP0.994320.853
43DAP/42DAP1.03640.627
47DAP/43DAP0.985360.928
52DAP/47DAP1.005631
57DAP/52DAP1.064290.679
57DAP/7DAP1.19891

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.78940.06
17DAP/reference0.963460.447
27DAP/reference1.133940.301
39DAP/reference1.073270.411
41DAP/reference1.088661
42DAP/reference0.932570.235
43DAP/reference1.10980.457
47DAP/reference1.068470.67
52DAP/reference0.761160.026
57DAP/reference1.077710.966

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.085060.279
17DAP/reference1.013820.904
27DAP/reference0.94540.34
39DAP/reference0.978950.539
41DAP/reference0.854970.035
42DAP/reference0.889180.046
43DAP/reference1.196610.251
47DAP/reference0.903540.054
52DAP/reference0.991770.619
57DAP/reference1.017750.887

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.937690.249
17DAP/reference1.004330.886
27DAP/reference1.040641
39DAP/reference0.949560.36
41DAP/reference0.881780.167
42DAP/reference1.051620.743
43DAP/reference0.85720.206
47DAP/reference0.905530.199
52DAP/reference0.859880.166
57DAP/reference0.655360.033

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.95921
26DAP/20DAP1.026951
34DAP/26DAP1.061451
51DAP/34DAP1.144620.1
52DAP/51DAP1.016460.848
53DAP/52DAP1.015670.921
55DAP/53DAP1.140690.547
57DAP/55DAP0.968080.831
62DAP/57DAP1.211540.569
68DAP/62DAP1.378230.869
68DAP/14DAP0.776610.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.904360.253

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.525630.1
Mature Green Tomato/Ripe Tomato0.891560.287
Immature Eggplant/Mature Eggplant1.763430.05
Ripe Pepper/Ripe Tomato1.058511
Mature Eggplant/Ripe Tomato0.743361

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.063190.473
1-1-2/M820.944081
12-2/M820.978730.955
12-4/M820.974361
1-3/M821.015941
2-1-1/M82N/AN/A
2-1/M820.75888N/A
2-6/M820.855020.501
3-2/M820.958741
4-1-1/M820.806041
4-1/M820.970881
4-3-2/M820.896521
4-3/M820.836410.475
5-3/M821.143441
6-2/M820.830990.481
6-3/M821.012931
7-1/M821.01451
7-2/M820.71142N/A
9-3-2/M820.920740.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.991851
IL2-6/WTpooled1.023510.788
IL7-5/WTpooled1.6415N/A
IL7-3/WTpooled0.870940.418
IL12-4/WTpooled0.98411
IL1-4/WTpooled1.127890.426
WT/WTpooled0.957261

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.11921

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.07720.823
DC3000/delta hrp 6h1.067521
DC3000/delta hrp 12h1.009791
DC3000/delta hrp 24h1.19540.06

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.155820.06
DC3000 delta B/DC3000 delta AB1.045110.524

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.530911
Exp 36h1.809660.409
Exp 60h1.597220.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988911
Var 0h1.394380.782
Var 12h I row2-row11.089930.324
Var 12h NI row2-row10.914410.713
Var 36h I row2-row10.865710.805
Var 36h NI row2-row10.864450.522
Var 60h I row2-row11.208031
Var 60h NI row2-row11.197570.904
Time course 0hI-0hNI1.101010.486
Time course 12hI-12hNI1.068280.216
Time course 36hI-36hNI1.171210.005
Time course 60hI-60hNI1.319520.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.037150.271
transgenic ySAMdc/azygous control (breaker)1.145911
transgenic ySAMdc/azygous control (red)0.959681

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.038890.125

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.583190.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.841251
Manapal/WT (break)0.998161
Manapal/WT (red)1.237740.164