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Expression of 1-1-8.1.1.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.07220.878
27DAP/17DAP0.991921
39DAP/27DAP1.114290.762
41DAP/39DAP1.025021
42DAP/41DAP0.95681
43DAP/42DAP1.059721
47DAP/43DAP0.96290.847
52DAP/47DAP1.049050.906
57DAP/52DAP1.066860.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.926990.238
17DAP/reference0.961410.567
27DAP/reference1.026110.794
39DAP/reference0.849650.292
41DAP/reference0.914820.267
42DAP/reference1.029360.485
43DAP/reference1.048660.202
47DAP/reference1.048740.223
52DAP/reference0.99830.689
57DAP/reference1.003150.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.999060.899
27DAP/17DAP0.995630.943
39DAP/27DAP1.01910.718
41DAP/39DAP0.944180.764
42DAP/41DAP1.013810.999
43DAP/42DAP1.028540.324
47DAP/43DAP0.989290.928
52DAP/47DAP0.974760.901
57DAP/52DAP0.958690.395
57DAP/7DAP1.003921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.219780.076
17DAP/reference1.245610.009
27DAP/reference1.18680.01
39DAP/reference1.212290.006
41DAP/reference1.100630.614
42DAP/reference1.093371
43DAP/reference1.200590.01
47DAP/reference1.117020.395
52DAP/reference1.277640.015
57DAP/reference1.29350.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.044180.545
17DAP/reference1.5960.375
27DAP/reference1.061690.516
39DAP/reference0.979760.661
41DAP/reference0.897760.078
42DAP/reference0.994960.655
43DAP/reference0.978010.607
47DAP/reference0.94870.221
52DAP/reference0.952720.171
57DAP/reference1.061190.64

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.194660.05
17DAP/reference1.030310.854
27DAP/reference1.240260.034
39DAP/reference1.287060.011
41DAP/reference1.112760.276
42DAP/reference1.192580.226
43DAP/reference1.13590.27
47DAP/reference0.923660.259
52DAP/reference1.277650.098
57DAP/reference1.012190.765

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.044640.916
26DAP/20DAP1.109680.647
34DAP/26DAP0.995961
51DAP/34DAP1.038680.84
52DAP/51DAP0.949041
53DAP/52DAP1.119270.204
55DAP/53DAP0.826130.024
57DAP/55DAP0.943930.799
62DAP/57DAP0.995881
68DAP/62DAP1.028711
68DAP/14DAP1.397290.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.067910.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.893210.418
Mature Green Tomato/Ripe Tomato1.215410.299
Immature Eggplant/Mature Eggplant1.34810.058
Ripe Pepper/Ripe Tomato1.179851
Mature Eggplant/Ripe Tomato1.741430.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.978150.961
1-1-2/M821.018671
12-2/M821.046271
12-4/M821.000861
1-3/M821.00521
2-1-1/M820.938620.683
2-1/M820.923331
2-6/M820.953881
3-2/M820.998221
4-1-1/M821.027331
4-1/M820.88261
4-3-2/M820.881690.698
4-3/M820.976031
5-3/M821.012861
6-2/M820.986041
6-3/M821.002751
7-1/M821.01331
7-2/M821.020691
9-3-2/M820.897510.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.014731
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.050291
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.874490.435
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.219180.133

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.097970.774
DC3000/delta hrp 6h1.012710.95
DC3000/delta hrp 12h0.948151
DC3000/delta hrp 24h1.175580.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.193980.042
DC3000 delta B/DC3000 delta AB1.238720.159

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.917071
Exp 36h1.154290.693
Exp 60h1.177031

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.953851
Var 0h1.236531
Var 12h I row2-row11.143410.544
Var 12h NI row2-row10.997671
Var 36h I row2-row11.055130.908
Var 36h NI row2-row10.90530.645
Var 60h I row2-row10.968860.582
Var 60h NI row2-row10.954050.977
Time course 0hI-0hNI0.883890.184
Time course 12hI-12hNI1.009890.892
Time course 36hI-36hNI1.171170.089
Time course 60hI-60hNI1.322130.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.03720.748
transgenic ySAMdc/azygous control (breaker)1.700110.248
transgenic ySAMdc/azygous control (red)1.278270.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.00580.909

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.088341

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.989181
Manapal/WT (break)1.251030.183
Manapal/WT (red)1.176321