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Expression of 1-1-8.1.11.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.979690.83
27DAP/17DAP1.065760.883
39DAP/27DAP1.091570.81
41DAP/39DAP0.967110.866
42DAP/41DAP0.998121
43DAP/42DAP0.977480.912
47DAP/43DAP1.006150.95
52DAP/47DAP1.049390.895
57DAP/52DAP0.922340.899

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.958870.402
17DAP/reference0.995870.957
27DAP/reference0.986080.711
39DAP/reference1.127110.359
41DAP/reference1.030410.393
42DAP/reference0.949110.107
43DAP/reference0.997610.924
47DAP/reference0.952860.077
52DAP/reference0.931990.283
57DAP/reference0.889870.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.943040.509
27DAP/17DAP0.955310.363
39DAP/27DAP1.030440.799
41DAP/39DAP1.090340.623
42DAP/41DAP0.980890.812
43DAP/42DAP1.060980.103
47DAP/43DAP1.028940.817
52DAP/47DAP0.995170.975
57DAP/52DAP1.055820.858
57DAP/7DAP1.04793N/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.975070.361
17DAP/reference0.939080.011
27DAP/reference0.888290.013
39DAP/reference1.022110.634
41DAP/reference1.037320.336
42DAP/reference0.978210.393
43DAP/reference0.973110.076
47DAP/reference0.943420.044
52DAP/reference0.987690.571
57DAP/reference0.96390.074

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.107110.524
17DAP/reference0.960030.474
27DAP/reference0.945510.327
39DAP/reference0.863260.077
41DAP/reference0.912920.16
42DAP/reference1.001260.594
43DAP/reference0.953240.404
47DAP/reference0.996250.66
52DAP/reference0.907580.027
57DAP/reference1.039330.807

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.935580.05
17DAP/reference0.943790.305
27DAP/reference0.960750.06
39DAP/reference0.924470.014
41DAP/reference0.961680.209
42DAP/reference0.861590.036
43DAP/reference0.881510.028
47DAP/reference0.923310.231
52DAP/reference0.94280.455
57DAP/reference0.726780.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.988761
26DAP/20DAP0.994461
34DAP/26DAP1.011781
51DAP/34DAP1.03890.73
52DAP/51DAP1.029310.626
53DAP/52DAP1.019140.868
55DAP/53DAP1.073420.312
57DAP/55DAP1.057670.975
62DAP/57DAP1.028480.868
68DAP/62DAP1.075860.912
68DAP/14DAP0.8040.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.014450.821

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.77001N/A
Mature Green Tomato/Ripe Tomato0.819420.411
Immature Eggplant/Mature Eggplant0.900010.366
Ripe Pepper/Ripe Tomato1.190121
Mature Eggplant/Ripe Tomato1.398060.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.023161
1-1-2/M821.004311
12-2/M820.953290.955
12-4/M820.970881
1-3/M820.983281
2-1-1/M820.918121
2-1/M821.036061
2-6/M820.930471
3-2/M820.983841
4-1-1/M820.988971
4-1/M820.710121
4-3-2/M821.163581
4-3/M821.020271
5-3/M821.029361
6-2/M821.023941
6-3/M821.002251
7-1/M821.006051
7-2/M820.982470.881
9-3-2/M820.918440.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.14998N/A
IL2-6/WTpooled1.102310.659
IL7-5/WTpooled0.75187N/A
IL7-3/WTpooled1.351331
IL12-4/WTpooled0.833340.554
IL1-4/WTpooled1.490171
WT/WTpooled1.01551

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.92176N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.961031
DC3000/delta hrp 6h0.895540.95
DC3000/delta hrp 12h0.881581
DC3000/delta hrp 24h0.975950.924

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.145920.11
DC3000 delta B/DC3000 delta AB1.077710.406

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.155971
Exp 36h1.105860.693
Exp 60h1.601210.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.998711
Var 0h1.000041
Var 12h I row2-row11.200670.324
Var 12h NI row2-row11.060521
Var 36h I row2-row11.010351
Var 36h NI row2-row10.939560.645
Var 60h I row2-row11.079841
Var 60h NI row2-row11.024191
Time course 0hI-0hNI1.008421
Time course 12hI-12hNI1.045430.72
Time course 36hI-36hNI0.998540.798
Time course 60hI-60hNI1.303550.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.033280.511
transgenic ySAMdc/azygous control (breaker)0.861150.15
transgenic ySAMdc/azygous control (red)0.820241

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.019540.495

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.040491

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.949241
Manapal/WT (break)0.823261
Manapal/WT (red)0.831650.216