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Expression of 1-1-8.1.11.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.253320.153
27DAP/17DAP1.450040.744
39DAP/27DAP0.980750.769
41DAP/39DAP0.963890.798
42DAP/41DAP1.179750.73
43DAP/42DAP1.185620.768
47DAP/43DAP0.948220.768
52DAP/47DAP1.198280.886
57DAP/52DAP0.983050.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.221310.089
17DAP/reference1.143540.178
27DAP/reference1.220360.063
39DAP/reference1.465710.025
41DAP/reference1.225750.014
42DAP/reference1.283880.002
43DAP/reference1.073670.287
47DAP/reference1.120380.593
52DAP/reference1.057630.663
57DAP/reference1.250860.153

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.175360.356
27DAP/17DAP0.979420.887
39DAP/27DAP1.125160.587
41DAP/39DAP0.918050.713
42DAP/41DAP0.994830.85
43DAP/42DAP1.204890.02
47DAP/43DAP0.931890.418
52DAP/47DAP1.044190.823
57DAP/52DAP0.940460.511
57DAP/7DAP1.842370.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.936440.361
17DAP/reference0.858990.064
27DAP/reference1.124710.035
39DAP/reference0.875690.083
41DAP/reference0.896410.223
42DAP/reference0.991480.612
43DAP/reference0.895640.145
47DAP/reference0.960490.293
52DAP/reference0.829920.053
57DAP/reference0.850960.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.193420.531
17DAP/reference1.413350.031
27DAP/reference1.842660.012
39DAP/reference1.248570.021
41DAP/reference1.399880.081
42DAP/reference1.714740.007
43DAP/reference1.854140.022
47DAP/reference1.894830.008
52DAP/reference1.462130.016
57DAP/reference1.162910.398

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.015620.75
17DAP/reference1.160910.685
27DAP/reference0.883190.102
39DAP/reference0.794470.019
41DAP/reference1.075851
42DAP/reference1.107530.658
43DAP/reference0.901570.294
47DAP/reference1.271910.073
52DAP/reference0.975280.675
57DAP/reference1.43130.012

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.385280.966
26DAP/20DAP0.968381
34DAP/26DAP1.238350.542
51DAP/34DAP1.105160.597
52DAP/51DAP1.12340.821
53DAP/52DAP0.982320.876
55DAP/53DAP1.416460.534
57DAP/55DAP1.435260.348
62DAP/57DAP0.909370.162
68DAP/62DAP0.737080.076
68DAP/14DAP0.675751

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.57650.055

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.675330.188
Mature Green Tomato/Ripe Tomato1.334550.149
Immature Eggplant/Mature Eggplant0.717350.07
Ripe Pepper/Ripe Tomato1.023781
Mature Eggplant/Ripe Tomato0.710681

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.337040.742
1-1-2/M821.3881
12-2/M820.863870.281
12-4/M821.221591
1-3/M821.235230.248
2-1-1/M821.2694N/A
2-1/M821.042941
2-6/M821.274450.695
3-2/M821.13991N/A
4-1-1/M821.21761
4-1/M821.50851
4-3-2/M821.094241
4-3/M821.479461
5-3/M820.981511
6-2/M821.013711
6-3/M821.072151
7-1/M820.861270.803
7-2/M820.877350.599
9-3-2/M821.09999N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.983951
IL2-6/WTpooled1.614460.456
IL7-5/WTpooled0.958241
IL7-3/WTpooled0.843720.31
IL12-4/WTpooled0.927251
IL1-4/WTpooled1.232241
WT/WTpooled1.001731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.775030.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.144070.921
DC3000/delta hrp 6h1.042581
DC3000/delta hrp 12h1.055261
DC3000/delta hrp 24h0.974480.861

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.839220.297

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.151041
Exp 36h0.716120.539
Exp 60h0.8290.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.053751
Var 0h0.901180.261
Var 12h I row2-row10.871950.77
Var 12h NI row2-row10.982330.906
Var 36h I row2-row11.008381
Var 36h NI row2-row11.095561
Var 60h I row2-row12.625720.562
Var 60h NI row2-row11.002741
Time course 0hI-0hNI1.032370.833
Time course 12hI-12hNI0.980450.874
Time course 36hI-36hNI0.911290.198
Time course 60hI-60hNI0.501070.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.987670.377
transgenic ySAMdc/azygous control (breaker)1.301360.248
transgenic ySAMdc/azygous control (red)1.163120.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.954670.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.113480.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.87390.087
Manapal/WT (break)1.576180.183
Manapal/WT (red)1.260380.222