TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-8.1.13.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.095330.904
27DAP/17DAP1.308920.742
39DAP/27DAP1.223460.347
41DAP/39DAP0.752040.185
42DAP/41DAP0.9981
43DAP/42DAP1.163380.698
47DAP/43DAP1.080180.793
52DAP/47DAP1.073370.91
57DAP/52DAP1.225820.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.028120.685
17DAP/reference1.042290.355
27DAP/reference1.046910.365
39DAP/reference1.015150.889
41DAP/reference1.08610.062
42DAP/reference0.924040.012
43DAP/reference0.981430.675
47DAP/reference1.047280.11
52DAP/reference0.976610.489
57DAP/reference1.043740.433

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.001041
27DAP/17DAP1.009260.973
39DAP/27DAP0.95170.405
41DAP/39DAP0.989661
42DAP/41DAP1.002270.887
43DAP/42DAP1.057050.042
47DAP/43DAP1.031460.779
52DAP/47DAP0.995250.962
57DAP/52DAP0.981540.691
57DAP/7DAP0.988771

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.942470.361
17DAP/reference0.929120.295
27DAP/reference0.944330.215
39DAP/reference0.900120.126
41DAP/reference0.885010.111
42DAP/reference0.892640.151
43DAP/reference0.893770.046
47DAP/reference0.838740.057
52DAP/reference0.833590.019
57DAP/reference0.9940.549

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.879430.176
17DAP/reference0.997550.766
27DAP/reference0.949710.304
39DAP/reference0.907940.105
41DAP/reference0.924520.177
42DAP/reference0.945060.237
43DAP/reference1.109310.54
47DAP/reference1.010050.916
52DAP/reference0.91520.06
57DAP/reference0.970260.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.886980.119
17DAP/reference0.989540.751
27DAP/reference1.054760.903
39DAP/reference1.040240.67
41DAP/reference0.974280.293
42DAP/reference0.904880.134
43DAP/reference0.975970.568
47DAP/reference1.004270.754
52DAP/reference1.183860.694
57DAP/reference0.985440.643

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.096250.56
26DAP/20DAP1.047010.855
34DAP/26DAP0.993151
51DAP/34DAP1.044230.719
52DAP/51DAP0.960290.151
53DAP/52DAP1.115080.594
55DAP/53DAP1.003750.908
57DAP/55DAP0.986040.923
62DAP/57DAP1.008821
68DAP/62DAP0.967530.769
68DAP/14DAP0.856670.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.024150.782

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.258650.063
Mature Green Tomato/Ripe Tomato0.222250.018
Immature Eggplant/Mature Eggplant0.91290.366
Ripe Pepper/Ripe Tomato1.117511
Mature Eggplant/Ripe Tomato0.486151

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.125510.742
1-1-2/M821.05811
12-2/M821.051921
12-4/M821.041771
1-3/M821.10550.479
2-1-1/M821.084380.689
2-1/M821.054291
2-6/M821.046350.505
3-2/M821.021160.717
4-1-1/M820.951231
4-1/M821.256140.853
4-3-2/M821.288420.246
4-3/M820.936151
5-3/M821.007141
6-2/M821.038671
6-3/M820.996411
7-1/M82N/AN/A
7-2/M821.096251
9-3-2/M821.20361N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.357570.277
IL2-6/WTpooled1.078750.584
IL7-5/WTpooled0.4718N/A
IL7-3/WTpooled0.883880.418
IL12-4/WTpooled0.88370.581
IL1-4/WTpooled1.049481
WT/WTpooled0.99721

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.962280.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.985541
DC3000/delta hrp 6h1.230471
DC3000/delta hrp 12h1.004811
DC3000/delta hrp 24h1.040820.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.158880.042
DC3000 delta B/DC3000 delta AB1.126620.284

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.963831
Exp 36h1.335780.693
Exp 60h1.262580.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.94451
Var 0h0.429670.933
Var 12h I row2-row11.12250.254
Var 12h NI row2-row10.926170.713
Var 36h I row2-row10.983081
Var 36h NI row2-row11.101891
Var 60h I row2-row11.006831
Var 60h NI row2-row11.229550.904
Time course 0hI-0hNI1.138040.764
Time course 12hI-12hNI0.989490.972
Time course 36hI-36hNI1.001270.811
Time course 60hI-60hNI1.908960.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.084250.305
transgenic ySAMdc/azygous control (breaker)1.251850.248
transgenic ySAMdc/azygous control (red)1.136770.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.939530.097

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.881520.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.815291
Manapal/WT (break)0.832591
Manapal/WT (red)0.590920.181