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Expression of 1-1-8.1.17.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.936290.558
27DAP/17DAP0.921020.899
39DAP/27DAP1.045281
41DAP/39DAP1.185990.553
42DAP/41DAP1.12680.941
43DAP/42DAP1.186530.982
47DAP/43DAP1.11980.647
52DAP/47DAP0.974550.837
57DAP/52DAP1.112590.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.047680.96
17DAP/reference1.216620.047
27DAP/reference1.156940.058
39DAP/reference1.215940.075
41DAP/reference1.052850.421
42DAP/reference1.179450.103
43DAP/reference0.98780.805
47DAP/reference1.355140.004
52DAP/reference1.304840.014
57DAP/reference0.979350.553

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.003260.826
27DAP/17DAP1.204920.957
39DAP/27DAP1.230230.526
41DAP/39DAP0.893690.729
42DAP/41DAP1.007990.772
43DAP/42DAP1.082490.585
47DAP/43DAP0.837290.243
52DAP/47DAP1.265510.46
57DAP/52DAP0.75080.244
57DAP/7DAP1.17430.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.110930.676
17DAP/reference1.110370.971
27DAP/reference1.133680.197
39DAP/reference1.069630.46
41DAP/reference1.218530.02
42DAP/reference1.174740.534
43DAP/reference1.349740.023
47DAP/reference1.340060.018
52DAP/reference1.2350.171
57DAP/reference1.42260.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.166760.156
17DAP/reference1.248710.303
27DAP/reference1.211260.083
39DAP/reference1.232620.2
41DAP/reference1.350090.034
42DAP/reference1.225440.072
43DAP/reference1.117310.835
47DAP/reference1.186970.048
52DAP/reference1.273110.021
57DAP/reference1.235740.324

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.085790.493
17DAP/reference0.950840.647
27DAP/reference0.832120.337
39DAP/reference1.088061
41DAP/reference1.100191
42DAP/reference1.745420.046
43DAP/reference1.407970.25
47DAP/reference1.407030.029
52DAP/reference1.364610.095
57DAP/reference2.591620.098

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.916061
26DAP/20DAP2.45975N/A
34DAP/26DAP1.00470.898
51DAP/34DAP1.030770.962
52DAP/51DAP1.304580.061
53DAP/52DAP0.895180.562
55DAP/53DAP1.33140.813
57DAP/55DAP1.418240.906
62DAP/57DAP0.873050.466
68DAP/62DAP0.724570.245
68DAP/14DAP1.887160.17

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.149290.855

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.433520.081
Mature Green Tomato/Ripe Tomato0.722980.042
Immature Eggplant/Mature Eggplant1.022960.528
Ripe Pepper/Ripe Tomato1.606431
Mature Eggplant/Ripe Tomato0.71231

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.950440.961
1-1-2/M821.130560.977
12-2/M820.59863N/A
12-4/M820.991210.358
1-3/M820.808790.501
2-1-1/M820.769670.784
2-1/M82N/AN/A
2-6/M820.97521N/A
3-2/M821.3465N/A
4-1-1/M82N/AN/A
4-1/M821.05022N/A
4-3-2/M820.78942N/A
4-3/M820.846020.72
5-3/M821.00751
6-2/M820.7797N/A
6-3/M821.107141
7-1/M82N/AN/A
7-2/M820.841540.796
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.99081
IL2-6/WTpooled1.046881
IL7-5/WTpooled1.306660.792
IL7-3/WTpooled1.20370.362
IL12-4/WTpooled1.203240.737
IL1-4/WTpooled1.278021
WT/WTpooled0.918781

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.19874N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.562150.846
DC3000/delta hrp 6h1.123511
DC3000/delta hrp 12h1.126241
DC3000/delta hrp 24h1.066080.655

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.057781
Exp 36h1.112090.693
Exp 60h1.242750.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.94034N/A
Var 0h0.977381
Var 12h I row2-row12.387240.506
Var 12h NI row2-row11.028130.649
Var 36h I row2-row11.044571
Var 36h NI row2-row10.602880.645
Var 60h I row2-row10.524090.582
Var 60h NI row2-row11.207231
Time course 0hI-0hNI0.987271
Time course 12hI-12hNI0.983740.964
Time course 36hI-36hNI1.267320.58
Time course 60hI-60hNI1.545530.08

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.899930.246
transgenic ySAMdc/azygous control (breaker)1.085981
transgenic ySAMdc/azygous control (red)1.084220.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.822460.431

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.416290.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.744720.172
Manapal/WT (break)1.039841
Manapal/WT (red)0.634370.181