TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-8.1.19.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.052720.891
27DAP/17DAP1.260250.758
39DAP/27DAP1.362320.511
41DAP/39DAP1.216590.313
42DAP/41DAP0.780870.774
43DAP/42DAP0.921620.863
47DAP/43DAP1.265150.442
52DAP/47DAP0.849640.602
57DAP/52DAP0.989450.974

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.099760.735
17DAP/reference1.277050.017
27DAP/reference1.231220.539
39DAP/reference1.235350.165
41DAP/reference1.441580.054
42DAP/reference1.215950.166
43DAP/reference1.232810.089
47DAP/reference1.209690.026
52DAP/reference1.167250.476
57DAP/reference1.053591

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.024560.871
27DAP/17DAP1.058290.928
39DAP/27DAP0.976740.908
41DAP/39DAP0.921640.822
42DAP/41DAP1.027131
43DAP/42DAP1.244520.351
47DAP/43DAP1.183620.308
52DAP/47DAP1.252090.34
57DAP/52DAP1.110060.877
57DAP/7DAP1.461250.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.046580.91
17DAP/reference1.296930.162
27DAP/reference1.240730.301
39DAP/reference1.401550.024
41DAP/reference1.286430.104
42DAP/reference1.550970.021
43DAP/reference1.412740.01
47DAP/reference1.296830.395
52DAP/reference1.508310.017
57DAP/reference1.793620.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.771590.306
17DAP/reference1.052060.839
27DAP/reference1.104620.648
39DAP/reference0.949840.509
41DAP/reference1.152390.587
42DAP/reference1.41350.126
43DAP/reference1.169660.54
47DAP/reference1.099410.556
52DAP/reference1.262410.393
57DAP/reference1.265060.363

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.149430.676
17DAP/reference1.238490.585
27DAP/reference1.576870.038
39DAP/reference1.542330.016
41DAP/reference1.356640.039
42DAP/reference1.484680.106
43DAP/reference1.129970.336
47DAP/reference1.065350.82
52DAP/reference1.525330.08
57DAP/reference0.85590.09

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.53226N/A
26DAP/20DAP0.997081
34DAP/26DAP1.08931
51DAP/34DAP1.929790.081
52DAP/51DAP0.997131
53DAP/52DAP1.671380.027
55DAP/53DAP0.853560.176
57DAP/55DAP0.745890.116
62DAP/57DAP0.628530.028
68DAP/62DAP1.299860.831
68DAP/14DAP0.989641

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.3790.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.641950.163
Mature Green Tomato/Ripe Tomato0.450430.017
Immature Eggplant/Mature Eggplant4.715680.05
Ripe Pepper/Ripe Tomato1.175011
Mature Eggplant/Ripe Tomato0.85291

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.524810.742
1-1-2/M820.92251
12-2/M821.092760.405
12-4/M821.090751
1-3/M82N/AN/A
2-1-1/M820.994711
2-1/M82N/AN/A
2-6/M821.107410.695
3-2/M821.51913N/A
4-1-1/M821.26438N/A
4-1/M820.92751N/A
4-3-2/M821.14057N/A
4-3/M821.16657N/A
5-3/M821.020161
6-2/M821.082441
6-3/M821.087151
7-1/M82N/AN/A
7-2/M821.61047N/A
9-3-2/M820.894630.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.170370.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.032890.921
DC3000/delta hrp 6h1.001790.95
DC3000/delta hrp 12h1.018181
DC3000/delta hrp 24h1.892240.027

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.862390.076
DC3000 delta B/DC3000 delta AB1.29260.162

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.087881
Exp 36h1.508510.409
Exp 60h1.687130.22

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.058911
Var 0h0.900250.933
Var 12h I row2-row11.270090.198
Var 12h NI row2-row11.415410.649
Var 36h I row2-row11.198570.283
Var 36h NI row2-row10.964190.791
Var 60h I row2-row10.806460.285
Var 60h NI row2-row11.01931
Time course 0hI-0hNI1.080170.603
Time course 12hI-12hNI1.452860.005
Time course 36hI-36hNI1.740240.006
Time course 60hI-60hNI2.848120.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.109080.325
transgenic ySAMdc/azygous control (breaker)0.58360.142
transgenic ySAMdc/azygous control (red)0.926871

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.946740.153

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.953860.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.449570.14
Manapal/WT (break)1.13351
Manapal/WT (red)1.053511