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Expression of 1-1-8.1.2.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.211640.443
27DAP/17DAP0.986211
39DAP/27DAP1.230620.618
41DAP/39DAP0.805670.296
42DAP/41DAP0.870220.774
43DAP/42DAP1.041631
47DAP/43DAP1.042050.873
52DAP/47DAP0.899720.702
57DAP/52DAP1.121310.964

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.639220.049
17DAP/reference1.469950.015
27DAP/reference1.359230.048
39DAP/reference1.41110.03
41DAP/reference1.520110.029
42DAP/reference1.728610.001
43DAP/reference1.330040.014
47DAP/reference1.447890.001
52DAP/reference1.172350.335
57DAP/reference1.116330.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.062820.642
27DAP/17DAP0.905210.475
39DAP/27DAP0.788030.034
41DAP/39DAP1.045540.801
42DAP/41DAP0.890730.253
43DAP/42DAP0.92580.447
47DAP/43DAP0.88530.163
52DAP/47DAP1.251640.519
57DAP/52DAP1.255350.219
57DAP/7DAP0.658571

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.066830.718
17DAP/reference0.979590.518
27DAP/reference0.998910.656
39DAP/reference1.360840.011
41DAP/reference1.126190.375
42DAP/reference1.205690.308
43DAP/reference1.044150.873
47DAP/reference1.155150.525
52DAP/reference1.154030.352
57DAP/reference1.219120.183

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.135760.538
17DAP/reference2.504930.007
27DAP/reference2.020740.012
39DAP/reference1.621840.066
41DAP/reference1.703890.03
42DAP/reference1.638490.013
43DAP/reference1.571630.176
47DAP/reference1.768760.008
52DAP/reference1.109670.498
57DAP/reference1.737440.072

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.152130.709
17DAP/reference1.292410.337
27DAP/reference0.863010.286
39DAP/reference1.045650.819
41DAP/reference1.017181
42DAP/reference1.345490.065
43DAP/reference1.316110.445
47DAP/reference1.255010.055
52DAP/reference1.085810.639
57DAP/reference1.464540.079

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.717250.379
26DAP/20DAP0.925021
34DAP/26DAP1.299640.819
51DAP/34DAP1.369540.402
52DAP/51DAP1.457110.046
53DAP/52DAP0.890790.455
55DAP/53DAP0.924670.489
57DAP/55DAP0.640090.079
62DAP/57DAP1.47859N/A
68DAP/62DAP0.685560.406
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.428590.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.478410.058
Mature Green Tomato/Ripe Tomato1.35947N/A
Immature Eggplant/Mature Eggplant0.874230.159
Ripe Pepper/Ripe Tomato2.191691
Mature Eggplant/Ripe Tomato1.335011

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.996371
1-1-2/M821.048621
12-2/M820.810.955
12-4/M820.864150.298
1-3/M821.355280.248
2-1-1/M821.213710.764
2-1/M820.765040.325
2-6/M821.272020.355
3-2/M821.07794N/A
4-1-1/M821.01461
4-1/M820.29656N/A
4-3-2/M820.936910.698
4-3/M821.081
5-3/M820.981841
6-2/M821.307181
6-3/M820.76167N/A
7-1/M821.015441
7-2/M821.340090.385
9-3-2/M821.2955N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.841050.247
IL2-6/WTpooled1.14040.441
IL7-5/WTpooled0.943821
IL7-3/WTpooled0.836511
IL12-4/WTpooled0.90731
IL1-4/WTpooled0.692380.415
WT/WTpooled1.181660.87

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.013621

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.896381
DC3000/delta hrp 6h1.00190.95
DC3000/delta hrp 12h1.256131
DC3000/delta hrp 24h0.778940.053

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.703120.023
DC3000 delta B/DC3000 delta AB0.626860.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.881411
Exp 36h0.850360.539
Exp 60h0.780230.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.991651
Var 0h0.558550.933
Var 12h I row2-row10.721460.353
Var 12h NI row2-row11.025241
Var 36h I row2-row10.913231
Var 36h NI row2-row11.266690.482
Var 60h I row2-row11.033421
Var 60h NI row2-row11.051861
Time course 0hI-0hNI0.983210.95
Time course 12hI-12hNI0.978640.87
Time course 36hI-36hNI0.918320.183
Time course 60hI-60hNI0.166530.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.020950.863
transgenic ySAMdc/azygous control (breaker)1.407810.178
transgenic ySAMdc/azygous control (red)1.193820.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.141220.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.052260.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.353090.105
Manapal/WT (break)1.493490.14
Manapal/WT (red)1.659890.142