Expression of 1-1-8.1.20.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01747 | 0.876 |
27DAP/17DAP | 1.08933 | 0.873 |
39DAP/27DAP | 0.83288 | 0.594 |
41DAP/39DAP | 1.193 | 0.96 |
42DAP/41DAP | 0.81662 | 1 |
43DAP/42DAP | 0.90076 | 0.813 |
47DAP/43DAP | 1.59628 | 0.412 |
52DAP/47DAP | 1.16735 | 0.943 |
57DAP/52DAP | 0.76535 | 0.768 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82994 | 0.046 |
17DAP/reference | 1.03984 | 0.653 |
27DAP/reference | 0.95105 | 0.457 |
39DAP/reference | 1.06938 | 0.654 |
41DAP/reference | 0.93899 | 0.267 |
42DAP/reference | 0.88287 | 0.004 |
43DAP/reference | 1.06746 | 0.425 |
47DAP/reference | 1.06739 | 0.541 |
52DAP/reference | 0.84393 | 0.158 |
57DAP/reference | 1.03718 | 0.643 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.38142 | 0.581 |
27DAP/17DAP | 1.06394 | 0.969 |
39DAP/27DAP | 1.16591 | 0.496 |
41DAP/39DAP | 1.22206 | 0.579 |
42DAP/41DAP | 0.80904 | 0.173 |
43DAP/42DAP | 1.23352 | 0.513 |
47DAP/43DAP | 0.96485 | 0.896 |
52DAP/47DAP | 1.12098 | 1 |
57DAP/52DAP | 1.25768 | 0.722 |
57DAP/7DAP | 1.06952 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93604 | 0.27 |
17DAP/reference | 1.01969 | 0.627 |
27DAP/reference | 0.92025 | 0.125 |
39DAP/reference | 0.96879 | 0.307 |
41DAP/reference | 1.012 | 0.848 |
42DAP/reference | 1.01246 | 1 |
43DAP/reference | 1.08256 | 0.637 |
47DAP/reference | 0.95655 | 0.504 |
52DAP/reference | 1.02621 | 0.941 |
57DAP/reference | 1.03335 | 0.571 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02034 | 0.812 |
17DAP/reference | 0.86162 | 0.066 |
27DAP/reference | 0.74763 | 0.049 |
39DAP/reference | 0.81751 | 0.091 |
41DAP/reference | 0.88232 | 0.152 |
42DAP/reference | 0.81341 | 0.098 |
43DAP/reference | 0.89124 | 0.217 |
47DAP/reference | 0.87969 | 0.11 |
52DAP/reference | 0.95468 | 0.38 |
57DAP/reference | 0.87189 | 0.116 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85665 | 0.068 |
17DAP/reference | 0.95221 | 0.342 |
27DAP/reference | 0.92787 | 0.092 |
39DAP/reference | 0.81821 | 0.008 |
41DAP/reference | 0.96201 | 0.371 |
42DAP/reference | 0.92433 | 0.087 |
43DAP/reference | 0.93849 | 0.348 |
47DAP/reference | 0.95429 | 0.348 |
52DAP/reference | 0.94151 | 0.472 |
57DAP/reference | 0.94492 | 0.468 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.32478 | 0.966 |
26DAP/20DAP | 1.56592 | 0.524 |
34DAP/26DAP | 1.63926 | 0.819 |
51DAP/34DAP | 1.79846 | 0.775 |
52DAP/51DAP | 1.28651 | 0.821 |
53DAP/52DAP | 1.03173 | 0.944 |
55DAP/53DAP | 1.01278 | 0.886 |
57DAP/55DAP | 1.55204 | 0.927 |
62DAP/57DAP | 1.16351 | 0.622 |
68DAP/62DAP | 1.23962 | 0.858 |
68DAP/14DAP | 0.94742 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.90908 | 0.52 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 3.66875 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.56125 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.54305 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.12086 | 0.591 |
1-1-2/M82 | 0.91641 | 1 |
12-2/M82 | 0.89576 | 0.955 |
12-4/M82 | 0.81027 | 0.358 |
1-3/M82 | 0.80825 | 0.378 |
2-1-1/M82 | 1.15612 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.00966 | 1 |
3-2/M82 | 1.11962 | |
4-1-1/M82 | 1.09238 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.90561 | |
5-3/M82 | 0.87903 | 0.642 |
6-2/M82 | 1.23004 | 1 |
6-3/M82 | 1.0166 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.91544 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.25796 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00722 | 1 |
DC3000/delta hrp 6h | 0.66062 | |
DC3000/delta hrp 12h | 1.15014 | 1 |
DC3000/delta hrp 24h | 1.08395 | 0.453 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02686 | 1 |
Exp 36h | 2.08685 | 1 |
Exp 60h | 1.58075 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 2.50043 | 0.613 |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | 0.52871 | 0.645 |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 0.97591 | 1 |
Time course 0hI-0hNI | 1.67414 | 0.662 |
Time course 12hI-12hNI | 1.0792 | 1 |
Time course 36hI-36hNI | 1.41905 | 1 |
Time course 60hI-60hNI | 1.55242 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0687 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 0.69457 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.94092 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00187 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8111 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.13427 | 0.086 |
Manapal/WT (break) | 0.93971 | 1 |
Manapal/WT (red) | 0.94495 | 0.728 |
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