Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-8.1.3.2

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.38568	0.878
27DAP/17DAP	0.65997	0.202
39DAP/27DAP	2.06428	0.116
41DAP/39DAP	0.78041	0.303
42DAP/41DAP	0.93471	1
43DAP/42DAP	1.1016	1
47DAP/43DAP	1.02963	0.934
52DAP/47DAP	2.04361	0.152
57DAP/52DAP	1.06973	0.98

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.7066	0.006
17DAP/reference	1.33115	0.032
27DAP/reference	1.84594	0.014
39DAP/reference	1.34717	0.497
41DAP/reference	1.13799	0.855
42DAP/reference	1.67881	0.002
43DAP/reference	2.02569	N/A
47DAP/reference	1.83783	0.001
52DAP/reference	1.69698	0.043
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.96946	0.663
27DAP/17DAP	1.05738	1
39DAP/27DAP	1.10875	0.758
41DAP/39DAP	0.86198	0.617
42DAP/41DAP	1.01312	0.894
43DAP/42DAP	1.10822	0.297
47DAP/43DAP	0.83627	0.286
52DAP/47DAP	0.85495	0.222
57DAP/52DAP	0.87333	0.387
57DAP/7DAP	0.70649	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05435	0.625
17DAP/reference	0.76803	0.014
27DAP/reference	0.61876	0.01
39DAP/reference	0.60447	0.011
41DAP/reference	0.69751	0.07
42DAP/reference	0.74391	0.028
43DAP/reference	0.46974	0.011
47DAP/reference	1.71997	0.44
52DAP/reference	0.5044	0.009
57DAP/reference	0.49799	0.006

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.01643	0.884
17DAP/reference	1.65628	0.013
27DAP/reference	1.24998	0.715
39DAP/reference	1.61345	0.017
41DAP/reference	1.34085	0.068
42DAP/reference	1.66439	0.009
43DAP/reference	1.03398	0.478
47DAP/reference	1.57872	0.008
52DAP/reference	1.51514	0.011
57DAP/reference	1.41872	0.296

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.99279	0.016
17DAP/reference	1.60408	0.134
27DAP/reference	1.09028	0.575
39DAP/reference	1.07071	0.578
41DAP/reference	0.84406	0.209
42DAP/reference	0.79366	0.22
43DAP/reference	0.85785	0.237
47DAP/reference	2.13888	0.006
52DAP/reference	0.97734	0.472
57DAP/reference	1.80683	0.01

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.19133	0.966
26DAP/20DAP	0.93345	1
34DAP/26DAP	1.14846	1
51DAP/34DAP	1.2316	0.565
52DAP/51DAP	1.07644	0.77
53DAP/52DAP	1.09636	0.895
55DAP/53DAP	0.95582	0.761
57DAP/55DAP	1.28637	0.51
62DAP/57DAP	1.02597	1
68DAP/62DAP	0.81945	0.641
68DAP/14DAP	1.75825	0.915

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.05779	1

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.6224	0.058
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	1.0764	0.398
Ripe Pepper/Ripe Tomato	0.31952	0.224
Mature Eggplant/Ripe Tomato	0.58086	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.77644	1
IL2-6/WTpooled	1.68102	0.46
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.34428	N/A
IL12-4/WTpooled	0.85123	0.71
IL1-4/WTpooled	1.04405	1
WT/WTpooled	0.82045	0.764

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	8.52798	N/A
DC3000/delta hrp 6h	1.00512	0.95
DC3000/delta hrp 12h	1.03599	1
DC3000/delta hrp 24h	1.29676	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.2275	1
Exp 36h	1.12674	1
Exp 60h	1.38029	0.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.04656	1
Var 0h	1.45496	0.258
Var 12h I row2-row1	1.05985	0.544
Var 12h NI row2-row1	1.12679	0.34
Var 36h I row2-row1	1.11633	1
Var 36h NI row2-row1	0.7876	0.61
Var 60h I row2-row1	0.95289	0.582
Var 60h NI row2-row1	0.86197	0.69
Time course 0hI-0hNI	1.20091	0.451
Time course 12hI-12hNI	1.20581	0.032
Time course 36hI-36hNI	1.77973	0.01
Time course 60hI-60hNI	2.72752	0.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.96963	0.222
transgenic ySAMdc/azygous control (breaker)	0.72013	0.173
transgenic ySAMdc/azygous control (red)	0.94428	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.17512	0.041

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.04907	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.14565	0.14
Manapal/WT (break)	1.33771	0.183
Manapal/WT (red)	1.53362	0.15