Expression of 1-1-8.1.4.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.686230.071
27DAP/17DAP1.125820.854
39DAP/27DAP1.238880.615
41DAP/39DAP1.36760.339
42DAP/41DAP1.006351
43DAP/42DAP0.845520.606
47DAP/43DAP0.658050.156
52DAP/47DAP0.775470.338
57DAP/52DAP1.525750.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.013760.771
17DAP/reference0.872950.033
27DAP/reference1.04580.672
39DAP/reference0.949810.541
41DAP/reference0.909010.267
42DAP/reference1.127250.045
43DAP/reference1.114820.175
47DAP/reference1.000260.72
52DAP/reference1.019741
57DAP/reference1.17670.097

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.252120.205
27DAP/17DAP0.839770.614
39DAP/27DAP0.926780.601
41DAP/39DAP1.221490.382
42DAP/41DAP0.923210.456
43DAP/42DAP0.819810.046
47DAP/43DAP0.956760.696
52DAP/47DAP1.299590.38
57DAP/52DAP1.512670.071
57DAP/7DAP0.732591

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.915150.326
17DAP/reference0.833150.22
27DAP/reference0.843280.082
39DAP/reference1.129920.157
41DAP/reference1.179480.171
42DAP/reference0.791610.035
43DAP/reference0.882170.151
47DAP/reference1.338440.127
52DAP/reference1.04580.526
57DAP/reference1.086220.966

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.004510.93
17DAP/reference0.746290.03
27DAP/reference0.913130.352
39DAP/reference0.95150.485
41DAP/reference1.146880.269
42DAP/reference1.16940.288
43DAP/reference0.758080.027
47DAP/reference1.113270.116
52DAP/reference1.045821
57DAP/reference1.089970.705

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.848310.183
17DAP/reference1.037680.934
27DAP/reference1.106670.092
39DAP/reference1.090630.496
41DAP/reference1.179770.439
42DAP/reference1.006661
43DAP/reference1.091590.894
47DAP/reference1.004280.667
52DAP/reference1.357190.341
57DAP/reference1.20010.481

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.045420.966
26DAP/20DAP2.428910.19
34DAP/26DAP0.775760.412
51DAP/34DAP1.622790.055
52DAP/51DAP0.900551
53DAP/52DAP0.932840.891
55DAP/53DAP0.749850.053
57DAP/55DAP0.90140.56
62DAP/57DAP1.200160.723
68DAP/62DAP2.198080.058
68DAP/14DAP3.37220.02

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.766210.108

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.967980.726
Mature Green Tomato/Ripe Tomato2.471940.02
Immature Eggplant/Mature Eggplant0.964871
Ripe Pepper/Ripe Tomato1.242841
Mature Eggplant/Ripe Tomato1.334860.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.98981
1-1-2/M820.900551
12-2/M820.966581
12-4/M820.878831
1-3/M821.608110.479
2-1-1/M820.961521
2-1/M820.94940.74
2-6/M820.77640.501
3-2/M821.55681
4-1-1/M820.907881
4-1/M821.289530.853
4-3-2/M821.016481
4-3/M821.165741
5-3/M821.190480.572
6-2/M821.343021
6-3/M821.131811
7-1/M820.929551
7-2/M821.20130.324
9-3-2/M821.010061

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.20046
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.72308
IL12-4/WTpooled0.891431
IL1-4/WTpooled1.16805
WT/WTpooled0.65031

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.062930.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.879070.807
DC3000/delta hrp 6h0.986620.95
DC3000/delta hrp 12h0.940861
DC3000/delta hrp 24h0.852480.069

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.810850.341
DC3000 delta B/DC3000 delta AB0.908440.288

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.928741
Exp 36h1.518311
Exp 60h1.563181

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.028541
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.067240.511
transgenic ySAMdc/azygous control (breaker)0.795590.15
transgenic ySAMdc/azygous control (red)1.006571

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.141970.223

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.796190.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.142030.105
Manapal/WT (break)1.072120.381
Manapal/WT (red)0.857180.187