Expression of 1-1-8.1.4.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.68623 | 0.071 |
27DAP/17DAP | 1.12582 | 0.854 |
39DAP/27DAP | 1.23888 | 0.615 |
41DAP/39DAP | 1.3676 | 0.339 |
42DAP/41DAP | 1.00635 | 1 |
43DAP/42DAP | 0.84552 | 0.606 |
47DAP/43DAP | 0.65805 | 0.156 |
52DAP/47DAP | 0.77547 | 0.338 |
57DAP/52DAP | 1.52575 | 0.735 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01376 | 0.771 |
17DAP/reference | 0.87295 | 0.033 |
27DAP/reference | 1.0458 | 0.672 |
39DAP/reference | 0.94981 | 0.541 |
41DAP/reference | 0.90901 | 0.267 |
42DAP/reference | 1.12725 | 0.045 |
43DAP/reference | 1.11482 | 0.175 |
47DAP/reference | 1.00026 | 0.72 |
52DAP/reference | 1.01974 | 1 |
57DAP/reference | 1.1767 | 0.097 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.25212 | 0.205 |
27DAP/17DAP | 0.83977 | 0.614 |
39DAP/27DAP | 0.92678 | 0.601 |
41DAP/39DAP | 1.22149 | 0.382 |
42DAP/41DAP | 0.92321 | 0.456 |
43DAP/42DAP | 0.81981 | 0.046 |
47DAP/43DAP | 0.95676 | 0.696 |
52DAP/47DAP | 1.29959 | 0.38 |
57DAP/52DAP | 1.51267 | 0.071 |
57DAP/7DAP | 0.73259 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91515 | 0.326 |
17DAP/reference | 0.83315 | 0.22 |
27DAP/reference | 0.84328 | 0.082 |
39DAP/reference | 1.12992 | 0.157 |
41DAP/reference | 1.17948 | 0.171 |
42DAP/reference | 0.79161 | 0.035 |
43DAP/reference | 0.88217 | 0.151 |
47DAP/reference | 1.33844 | 0.127 |
52DAP/reference | 1.0458 | 0.526 |
57DAP/reference | 1.08622 | 0.966 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00451 | 0.93 |
17DAP/reference | 0.74629 | 0.03 |
27DAP/reference | 0.91313 | 0.352 |
39DAP/reference | 0.9515 | 0.485 |
41DAP/reference | 1.14688 | 0.269 |
42DAP/reference | 1.1694 | 0.288 |
43DAP/reference | 0.75808 | 0.027 |
47DAP/reference | 1.11327 | 0.116 |
52DAP/reference | 1.04582 | 1 |
57DAP/reference | 1.08997 | 0.705 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84831 | 0.183 |
17DAP/reference | 1.03768 | 0.934 |
27DAP/reference | 1.10667 | 0.092 |
39DAP/reference | 1.09063 | 0.496 |
41DAP/reference | 1.17977 | 0.439 |
42DAP/reference | 1.00666 | 1 |
43DAP/reference | 1.09159 | 0.894 |
47DAP/reference | 1.00428 | 0.667 |
52DAP/reference | 1.35719 | 0.341 |
57DAP/reference | 1.2001 | 0.481 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04542 | 0.966 |
26DAP/20DAP | 2.42891 | 0.19 |
34DAP/26DAP | 0.77576 | 0.412 |
51DAP/34DAP | 1.62279 | 0.055 |
52DAP/51DAP | 0.90055 | 1 |
53DAP/52DAP | 0.93284 | 0.891 |
55DAP/53DAP | 0.74985 | 0.053 |
57DAP/55DAP | 0.9014 | 0.56 |
62DAP/57DAP | 1.20016 | 0.723 |
68DAP/62DAP | 2.19808 | 0.058 |
68DAP/14DAP | 3.3722 | 0.02 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.76621 | 0.108 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.96798 | 0.726 |
Mature Green Tomato/Ripe Tomato | 2.47194 | 0.02 |
Immature Eggplant/Mature Eggplant | 0.96487 | 1 |
Ripe Pepper/Ripe Tomato | 1.24284 | 1 |
Mature Eggplant/Ripe Tomato | 1.33486 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9898 | 1 |
1-1-2/M82 | 0.90055 | 1 |
12-2/M82 | 0.96658 | 1 |
12-4/M82 | 0.87883 | 1 |
1-3/M82 | 1.60811 | 0.479 |
2-1-1/M82 | 0.96152 | 1 |
2-1/M82 | 0.9494 | 0.74 |
2-6/M82 | 0.7764 | 0.501 |
3-2/M82 | 1.55681 | |
4-1-1/M82 | 0.90788 | 1 |
4-1/M82 | 1.28953 | 0.853 |
4-3-2/M82 | 1.01648 | 1 |
4-3/M82 | 1.16574 | 1 |
5-3/M82 | 1.19048 | 0.572 |
6-2/M82 | 1.34302 | 1 |
6-3/M82 | 1.13181 | 1 |
7-1/M82 | 0.92955 | 1 |
7-2/M82 | 1.2013 | 0.324 |
9-3-2/M82 | 1.01006 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.20046 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.72308 | |
IL12-4/WTpooled | 0.89143 | 1 |
IL1-4/WTpooled | 1.16805 | |
WT/WTpooled | 0.6503 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06293 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.87907 | 0.807 |
DC3000/delta hrp 6h | 0.98662 | 0.95 |
DC3000/delta hrp 12h | 0.94086 | 1 |
DC3000/delta hrp 24h | 0.85248 | 0.069 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.81085 | 0.341 |
DC3000 delta B/DC3000 delta AB | 0.90844 | 0.288 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.92874 | 1 |
Exp 36h | 1.51831 | 1 |
Exp 60h | 1.56318 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.02854 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06724 | 0.511 |
transgenic ySAMdc/azygous control (breaker) | 0.79559 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.00657 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.14197 | 0.223 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.79619 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.14203 | 0.105 |
Manapal/WT (break) | 1.07212 | 0.381 |
Manapal/WT (red) | 0.85718 | 0.187 |
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