Expression of 1-1-8.1.4.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88662 | 0.427 |
27DAP/17DAP | 1.01188 | 0.913 |
39DAP/27DAP | 1.41841 | 0.447 |
41DAP/39DAP | 1.05136 | 0.859 |
42DAP/41DAP | 1.24009 | 0.458 |
43DAP/42DAP | 0.82863 | 0.708 |
47DAP/43DAP | 0.94716 | 0.768 |
52DAP/47DAP | 1.07444 | 0.987 |
57DAP/52DAP | 1.08853 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92675 | 0.277 |
17DAP/reference | 0.84142 | 0.069 |
27DAP/reference | 0.95291 | 0.497 |
39DAP/reference | 0.90787 | 0.234 |
41DAP/reference | 0.75073 | 0.008 |
42DAP/reference | 0.96907 | 0.268 |
43DAP/reference | 1.06105 | 0.678 |
47DAP/reference | 0.9788 | 0.445 |
52DAP/reference | 1.08366 | 0.498 |
57DAP/reference | 1.22289 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.43847 | 0.184 |
27DAP/17DAP | 0.91542 | 0.782 |
39DAP/27DAP | 0.82541 | 0.127 |
41DAP/39DAP | 1.85396 | 0.024 |
42DAP/41DAP | 0.84509 | 0.14 |
43DAP/42DAP | 0.71426 | 0.031 |
47DAP/43DAP | 1.35815 | 0.133 |
52DAP/47DAP | 1.27699 | 0.609 |
57DAP/52DAP | 0.81185 | 0.352 |
57DAP/7DAP | 0.95502 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93603 | 0.246 |
17DAP/reference | 1.09436 | 0.328 |
27DAP/reference | 1.21969 | 0.03 |
39DAP/reference | 0.94629 | 0.23 |
41DAP/reference | 0.94048 | 0.357 |
42DAP/reference | 0.95159 | 0.355 |
43DAP/reference | 0.95378 | 0.385 |
47DAP/reference | 0.95612 | 0.504 |
52DAP/reference | 0.94138 | 0.304 |
57DAP/reference | 0.97928 | 0.494 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17784 | 0.463 |
17DAP/reference | 0.72324 | 0.021 |
27DAP/reference | 0.85076 | 0.084 |
39DAP/reference | 1.5632 | 0.489 |
41DAP/reference | 1.04522 | 0.862 |
42DAP/reference | 1.02065 | 0.655 |
43DAP/reference | 1.00508 | 0.706 |
47DAP/reference | 1.0821 | 0.311 |
52DAP/reference | 0.87371 | 0.131 |
57DAP/reference | 0.83291 | 0.144 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0678 | 0.493 |
17DAP/reference | 1.05353 | 0.638 |
27DAP/reference | 1.21053 | 0.067 |
39DAP/reference | 1.17366 | 0.025 |
41DAP/reference | 1.19769 | 0.108 |
42DAP/reference | 1.08821 | 0.47 |
43DAP/reference | 1.08107 | 0.58 |
47DAP/reference | 0.89412 | 0.174 |
52DAP/reference | 1.03359 | 0.946 |
57DAP/reference | 1.07608 | 0.436 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.85263 | 0.733 |
26DAP/20DAP | 0.81215 | 0.512 |
34DAP/26DAP | 1.13461 | 1 |
51DAP/34DAP | 0.70347 | 0.123 |
52DAP/51DAP | 1.82753 | |
53DAP/52DAP | 1.12979 | 0.91 |
55DAP/53DAP | 1.01237 | 1 |
57DAP/55DAP | 0.64624 | 0.38 |
62DAP/57DAP | 1.15798 | |
68DAP/62DAP | 1.19983 | |
68DAP/14DAP | 2.01204 | 0.487 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.22331 | 0.466 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.29335 | 0.69 |
Immature Eggplant/Mature Eggplant | 3.80292 | |
Ripe Pepper/Ripe Tomato | 0.40049 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.26179 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.98814 | |
12-2/M82 | 1.13037 | 1 |
12-4/M82 | 0.98493 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.31449 | 1 |
2-1/M82 | 0.49197 | |
2-6/M82 | 1.41053 | |
3-2/M82 | 0.81777 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.33313 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 2.77412 | 0.268 |
5-3/M82 | 0.61505 | 0.447 |
6-2/M82 | 3.58004 | 0.219 |
6-3/M82 | 0.39242 | |
7-1/M82 | 1.08092 | 1 |
7-2/M82 | 2.34475 | |
9-3-2/M82 | 2.13845 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98837 | 1 |
IL2-6/WTpooled | 1.12867 | 1 |
IL7-5/WTpooled | 1.12214 | 0.792 |
IL7-3/WTpooled | 0.90127 | |
IL12-4/WTpooled | 0.76274 | 0.581 |
IL1-4/WTpooled | 0.82208 | 0.699 |
WT/WTpooled | 0.97452 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.072 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96738 | 1 |
DC3000/delta hrp 6h | 0.96134 | 0.95 |
DC3000/delta hrp 12h | 0.91117 | 1 |
DC3000/delta hrp 24h | 0.71496 | 0.04 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.00054 | |
DC3000 delta B/DC3000 delta AB | 0.56745 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.18004 | 1 |
Exp 36h | 1.64899 | 0.489 |
Exp 60h | 1.24042 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.91934 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02774 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.57075 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.99534 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.19327 | 0.148 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.62579 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 6.59112 | 0.083 |
Manapal/WT (break) | 3.80436 | 0.13 |
Manapal/WT (red) | 1.21127 | 0.863 |
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