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Expression of 1-1-8.1.6.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.790740.278
27DAP/17DAP0.962370.939
39DAP/27DAP1.057350.938
41DAP/39DAP1.155790.929
42DAP/41DAP1.044670.941
43DAP/42DAP0.69810.495
47DAP/43DAP1.161470.702
52DAP/47DAP1.298460.575
57DAP/52DAP1.226390.955

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.811360.068
17DAP/reference0.879110.041
27DAP/reference0.900370.163
39DAP/reference0.992880.855
41DAP/reference0.927910.267
42DAP/reference0.851510.012
43DAP/reference0.989750.805
47DAP/reference0.901120.09
52DAP/reference1.051450.8
57DAP/reference1.065850.582

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.985940.542
27DAP/17DAP0.922530.748
39DAP/27DAP1.190680.441
41DAP/39DAP0.989740.986
42DAP/41DAP1.009180.869
43DAP/42DAP0.966340.729
47DAP/43DAP1.060450.749
52DAP/47DAP0.917260.746
57DAP/52DAP1.033070.941
57DAP/7DAP1.684921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.160620.177
17DAP/reference1.368910.134
27DAP/reference1.052780.804
39DAP/reference1.458410.014
41DAP/reference1.201370.046
42DAP/reference1.412530.03
43DAP/reference1.38790.074
47DAP/reference1.352480.266
52DAP/reference1.49180.008
57DAP/reference1.43430.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931310.399
17DAP/reference0.73550.023
27DAP/reference0.90110.144
39DAP/reference0.871990.089
41DAP/reference0.938940.299
42DAP/reference0.917040.261
43DAP/reference1.015770.62
47DAP/reference0.8730.149
52DAP/reference0.801370.093
57DAP/reference0.696860.058

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.956540.311
17DAP/reference1.00790.934
27DAP/reference0.978390.539
39DAP/reference1.2140.019
41DAP/reference0.997560.826
42DAP/reference1.117330.424
43DAP/reference1.067660.625
47DAP/reference0.907220.348
52DAP/reference1.254160.284
57DAP/reference1.092030.694

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.867960.585
26DAP/20DAP1.960550.12
34DAP/26DAP0.621070.109
51DAP/34DAP1.497520.095
52DAP/51DAP1.00451
53DAP/52DAP1.109950.935
55DAP/53DAP0.711040.445
57DAP/55DAP0.915870.715
62DAP/57DAPN/AN/A
68DAP/62DAP1.111360.481
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.167490.527

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.001040.898
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.18335N/A
Mature Eggplant/Ripe Tomato1.191270.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.17993N/A
1-1-2/M820.853651
12-2/M82N/AN/A
12-4/M820.945541
1-3/M821.604651
2-1-1/M820.968091
2-1/M821.29569N/A
2-6/M820.58014N/A
3-2/M821.62141N/A
4-1-1/M820.821770.779
4-1/M820.717440.737
4-3-2/M820.725541
4-3/M821.028121
5-3/M821.326721
6-2/M820.890361
6-3/M820.97881
7-1/M820.868160.803
7-2/M821.071441
9-3-2/M820.865661

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.42544N/A
IL2-6/WTpooled0.997991
IL7-5/WTpooled0.93267N/A
IL7-3/WTpooled1.118061
IL12-4/WTpooled0.903290.71
IL1-4/WTpooled1.145341
WT/WTpooled0.954131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.276240.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.188140.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.013081
DC3000/delta hrp 24h1.171960.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.888340.046
DC3000 delta B/DC3000 delta AB1.575190.118

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025981
Var 0h0.944851
Var 12h I row2-row11.077870.692
Var 12h NI row2-row11.274380.235
Var 36h I row2-row11.141070.489
Var 36h NI row2-row10.905740.549
Var 60h I row2-row10.682830.285
Var 60h NI row2-row10.966811
Time course 0hI-0hNI0.948650.729
Time course 12hI-12hNI0.968850.808
Time course 36hI-36hNI1.420670.008
Time course 60hI-60hNI3.065560.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.2780.612
transgenic ySAMdc/azygous control (breaker)1.087210.248
transgenic ySAMdc/azygous control (red)0.981911

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.010110.854

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.806880.274