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Expression of 1-1-8.1.9.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.132290.739
27DAP/17DAP0.92280.831
39DAP/27DAP1.30740.341
41DAP/39DAP0.667820.103
42DAP/41DAP1.068031
43DAP/42DAP1.11760.968
47DAP/43DAP0.741720.234
52DAP/47DAP1.110410.856
57DAP/52DAP1.465240.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.383090.038
17DAP/reference1.267740.1
27DAP/reference1.099450.498
39DAP/reference1.26680.108
41DAP/reference1.29660.079
42DAP/reference1.215390.001
43DAP/reference1.260780.061
47DAP/reference1.186490.069
52DAP/reference0.85920.147
57DAP/reference1.045580.662

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.175890.192
27DAP/17DAP1.018230.957
39DAP/27DAP0.916640.207
41DAP/39DAP1.175270.801
42DAP/41DAP1.006741
43DAP/42DAP0.791440.028
47DAP/43DAP1.065280.853
52DAP/47DAP0.854040.089
57DAP/52DAP1.010331
57DAP/7DAP1.002381

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.751250.027
17DAP/reference1.868190.006
27DAP/reference1.715290.006
39DAP/reference1.484150.008
41DAP/reference1.227250.075
42DAP/reference1.063620.686
43DAP/reference1.19820.013
47DAP/reference1.418730.081
52DAP/reference1.649380.015
57DAP/reference1.545360.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.301050.149
17DAP/reference1.641530.009
27DAP/reference1.833090.012
39DAP/reference1.789510.011
41DAP/reference1.369290.008
42DAP/reference1.606170.008
43DAP/reference1.341690.208
47DAP/reference1.557040.008
52DAP/reference1.11950.181
57DAP/reference1.289180.172

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.761010.015
17DAP/reference1.208530.111
27DAP/reference1.26160.044
39DAP/reference1.328320.67
41DAP/reference1.392820.01
42DAP/reference1.382920.017
43DAP/reference1.38480.012
47DAP/reference0.968980.478
52DAP/reference1.340040.059
57DAP/reference1.346660.153

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.018560.966
26DAP/20DAP1.876490.101
34DAP/26DAP0.863620.44
51DAP/34DAP0.888430.449
52DAP/51DAP0.98971
53DAP/52DAP0.910810.417
55DAP/53DAP0.672890.039
57DAP/55DAP1.463390.185
62DAP/57DAP1.138840.935
68DAP/62DAP0.816520.345
68DAP/14DAP1.007991

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.335260.038

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.051340.417
Mature Green Tomato/Ripe Tomato1.44770.015
Immature Eggplant/Mature Eggplant0.859190.197
Ripe Pepper/Ripe Tomato0.855260.224
Mature Eggplant/Ripe Tomato1.13031

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.759670.536
1-1-2/M821.278281
12-2/M821.024181
12-4/M820.987380.619
1-3/M821.762790.26
2-1-1/M820.857360.465
2-1/M820.627240.325
2-6/M820.836930.501
3-2/M820.980541
4-1-1/M821.231011
4-1/M821.293721
4-3-2/M821.207950.508
4-3/M821.102031
5-3/M821.142151
6-2/M820.965481
6-3/M821.124241
7-1/M820.96911
7-2/M821.148730.324
9-3-2/M821.1681

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.716220.243
IL2-6/WTpooled0.931071
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.568710.362
IL12-4/WTpooled1.196240.695
IL1-4/WTpooled0.91114N/A
WT/WTpooled0.968351

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.091270.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.626270.875
DC3000/delta hrp 6h0.944510.95
DC3000/delta hrp 12h0.976961
DC3000/delta hrp 24h1.095120.467

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.2290.333
DC3000 delta B/DC3000 delta AB1.098640.453

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.946230.265
Exp 36h0.966620.943
Exp 60h0.961480.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.084641
Var 0h0.482331
Var 12h I row2-row10.991961
Var 12h NI row2-row10.995731
Var 36h I row2-row11.067361
Var 36h NI row2-row10.92620.743
Var 60h I row2-row11.066181
Var 60h NI row2-row10.793720.516
Time course 0hI-0hNI0.89820.452
Time course 12hI-12hNI1.199030.071
Time course 36hI-36hNI1.423480.07
Time course 60hI-60hNI1.432980.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.886920.32
transgenic ySAMdc/azygous control (breaker)1.498660.178
transgenic ySAMdc/azygous control (red)1.228540.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.217960.037

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.869340.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.77821
Manapal/WT (break)1.196861
Manapal/WT (red)1.427350.134