Expression of 1-1-8.2.14.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11247 | 0.709 |
27DAP/17DAP | 1.32312 | 0.688 |
39DAP/27DAP | 0.96253 | 0.719 |
41DAP/39DAP | 1.06565 | 0.876 |
42DAP/41DAP | 0.83844 | 0.774 |
43DAP/42DAP | 0.96511 | 0.91 |
47DAP/43DAP | 1.10211 | 0.873 |
52DAP/47DAP | 1.24945 | 0.898 |
57DAP/52DAP | 1.05641 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91802 | 0.308 |
17DAP/reference | 0.85176 | 0.158 |
27DAP/reference | 0.84438 | 0.041 |
39DAP/reference | 0.86832 | 0.267 |
41DAP/reference | 0.86302 | 0.267 |
42DAP/reference | 0.86636 | 0.021 |
43DAP/reference | 0.88921 | 0.118 |
47DAP/reference | 0.84865 | 0.005 |
52DAP/reference | 0.98481 | 0.546 |
57DAP/reference | 0.89116 | 0.096 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89659 | 0.289 |
27DAP/17DAP | 1.02204 | 0.968 |
39DAP/27DAP | 1.09341 | 0.672 |
41DAP/39DAP | 0.9712 | 0.968 |
42DAP/41DAP | 0.96929 | 0.746 |
43DAP/42DAP | 0.9909 | 0.928 |
47DAP/43DAP | 1.14058 | 0.805 |
52DAP/47DAP | 0.99903 | 0.93 |
57DAP/52DAP | 0.89321 | 0.436 |
57DAP/7DAP | 1.22587 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88441 | 0.074 |
17DAP/reference | 0.82708 | 0.012 |
27DAP/reference | 0.83258 | 0.01 |
39DAP/reference | 0.81835 | 0.012 |
41DAP/reference | 0.76448 | 0.017 |
42DAP/reference | 0.69042 | 0.01 |
43DAP/reference | 0.62809 | 0.011 |
47DAP/reference | 0.78397 | 0.168 |
52DAP/reference | 0.59896 | 0.013 |
57DAP/reference | 0.69185 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87651 | 0.286 |
17DAP/reference | 0.70396 | 0.019 |
27DAP/reference | 1.02855 | 1 |
39DAP/reference | 1.16274 | 0.556 |
41DAP/reference | 1.02684 | 0.96 |
42DAP/reference | 1.08715 | 0.555 |
43DAP/reference | 1.00042 | 0.539 |
47DAP/reference | 0.78764 | 0.043 |
52DAP/reference | 0.94969 | 0.259 |
57DAP/reference | 0.76896 | 0.054 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82975 | 0.077 |
17DAP/reference | 0.90539 | 0.348 |
27DAP/reference | 0.80438 | 0.036 |
39DAP/reference | 0.79965 | 0.007 |
41DAP/reference | 0.93995 | 0.331 |
42DAP/reference | 0.91596 | 0.22 |
43DAP/reference | 0.91256 | 0.188 |
47DAP/reference | 0.81661 | 0.109 |
52DAP/reference | 0.76947 | 0.112 |
57DAP/reference | 1.1322 | 0.878 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16277 | 0.966 |
26DAP/20DAP | 0.89739 | 1 |
34DAP/26DAP | 1.44051 | 0.819 |
51DAP/34DAP | 1.1519 | 0.352 |
52DAP/51DAP | 0.88636 | 1 |
53DAP/52DAP | 0.93955 | 0.797 |
55DAP/53DAP | 0.99011 | 0.876 |
57DAP/55DAP | 0.69819 | 0.099 |
62DAP/57DAP | 1.85077 | 0.393 |
68DAP/62DAP | 2.09847 | 0.153 |
68DAP/14DAP | 2.15202 | 0.161 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.46578 | 0.264 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.87762 | 0.41 |
Mature Green Tomato/Ripe Tomato | 2.56463 | 0.021 |
Immature Eggplant/Mature Eggplant | 0.86398 | 0.176 |
Ripe Pepper/Ripe Tomato | 2.16267 | 0.258 |
Mature Eggplant/Ripe Tomato | 2.39666 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07902 | 0.877 |
1-1-2/M82 | 1.00345 | 1 |
12-2/M82 | 1.22901 | 1 |
12-4/M82 | 1.00917 | 1 |
1-3/M82 | 0.80572 | 0.351 |
2-1-1/M82 | 0.83939 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.93797 | 1 |
3-2/M82 | 0.89583 | |
4-1-1/M82 | 0.91045 | 1 |
4-1/M82 | 1.73329 | 0.295 |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.04983 | 1 |
5-3/M82 | 0.96847 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.9864 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.79337 | |
9-3-2/M82 | 0.89843 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.91802 | 0.247 |
IL2-6/WTpooled | 1.59696 | 0.419 |
IL7-5/WTpooled | 1.64975 | 0.792 |
IL7-3/WTpooled | 1.26392 | 1 |
IL12-4/WTpooled | 1.79533 | |
IL1-4/WTpooled | 0.89235 | 0.834 |
WT/WTpooled | 1.49636 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.77935 | 0.216 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0106 | 1 |
DC3000/delta hrp 6h | 0.94114 | 0.95 |
DC3000/delta hrp 12h | 1.01326 | 1 |
DC3000/delta hrp 24h | 0.94049 | 0.483 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.77812 | 0.203 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99174 | 1 |
Exp 36h | 0.85603 | 0.449 |
Exp 60h | 0.77898 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04218 | 1 |
Var 0h | 0.66897 | 1 |
Var 12h I row2-row1 | 0.8645 | 0.467 |
Var 12h NI row2-row1 | 0.97746 | 0.906 |
Var 36h I row2-row1 | 0.87133 | 0.575 |
Var 36h NI row2-row1 | 1.09674 | 0.482 |
Var 60h I row2-row1 | 1.28028 | 0.562 |
Var 60h NI row2-row1 | 0.95902 | 1 |
Time course 0hI-0hNI | 1.11976 | 0.603 |
Time course 12hI-12hNI | 1.04364 | 0.743 |
Time course 36hI-36hNI | 0.84333 | 0.035 |
Time course 60hI-60hNI | 0.406 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98883 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.59259 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.97363 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00326 | 0.909 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.10744 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.76824 | 0.093 |
Manapal/WT (break) | 1.48538 | 0.14 |
Manapal/WT (red) | 1.21572 | 0.413 |
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