Expression of 1-1-8.2.14.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.112470.709
27DAP/17DAP1.323120.688
39DAP/27DAP0.962530.719
41DAP/39DAP1.065650.876
42DAP/41DAP0.838440.774
43DAP/42DAP0.965110.91
47DAP/43DAP1.102110.873
52DAP/47DAP1.249450.898
57DAP/52DAP1.056411

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.918020.308
17DAP/reference0.851760.158
27DAP/reference0.844380.041
39DAP/reference0.868320.267
41DAP/reference0.863020.267
42DAP/reference0.866360.021
43DAP/reference0.889210.118
47DAP/reference0.848650.005
52DAP/reference0.984810.546
57DAP/reference0.891160.096

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.896590.289
27DAP/17DAP1.022040.968
39DAP/27DAP1.093410.672
41DAP/39DAP0.97120.968
42DAP/41DAP0.969290.746
43DAP/42DAP0.99090.928
47DAP/43DAP1.140580.805
52DAP/47DAP0.999030.93
57DAP/52DAP0.893210.436
57DAP/7DAP1.225870.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.884410.074
17DAP/reference0.827080.012
27DAP/reference0.832580.01
39DAP/reference0.818350.012
41DAP/reference0.764480.017
42DAP/reference0.690420.01
43DAP/reference0.628090.011
47DAP/reference0.783970.168
52DAP/reference0.598960.013
57DAP/reference0.691850.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.876510.286
17DAP/reference0.703960.019
27DAP/reference1.028551
39DAP/reference1.162740.556
41DAP/reference1.026840.96
42DAP/reference1.087150.555
43DAP/reference1.000420.539
47DAP/reference0.787640.043
52DAP/reference0.949690.259
57DAP/reference0.768960.054

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.829750.077
17DAP/reference0.905390.348
27DAP/reference0.804380.036
39DAP/reference0.799650.007
41DAP/reference0.939950.331
42DAP/reference0.915960.22
43DAP/reference0.912560.188
47DAP/reference0.816610.109
52DAP/reference0.769470.112
57DAP/reference1.13220.878

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.162770.966
26DAP/20DAP0.897391
34DAP/26DAP1.440510.819
51DAP/34DAP1.15190.352
52DAP/51DAP0.886361
53DAP/52DAP0.939550.797
55DAP/53DAP0.990110.876
57DAP/55DAP0.698190.099
62DAP/57DAP1.850770.393
68DAP/62DAP2.098470.153
68DAP/14DAP2.152020.161

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.465780.264

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.877620.41
Mature Green Tomato/Ripe Tomato2.564630.021
Immature Eggplant/Mature Eggplant0.863980.176
Ripe Pepper/Ripe Tomato2.162670.258
Mature Eggplant/Ripe Tomato2.396660.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.079020.877
1-1-2/M821.003451
12-2/M821.229011
12-4/M821.009171
1-3/M820.805720.351
2-1-1/M820.83939
2-1/M82N/AN/A
2-6/M820.937971
3-2/M820.89583
4-1-1/M820.910451
4-1/M821.733290.295
4-3-2/M82N/AN/A
4-3/M821.049831
5-3/M820.968470.642
6-2/M82N/AN/A
6-3/M820.9864
7-1/M82N/AN/A
7-2/M820.79337
9-3-2/M820.898430.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.918020.247
IL2-6/WTpooled1.596960.419
IL7-5/WTpooled1.649750.792
IL7-3/WTpooled1.263921
IL12-4/WTpooled1.79533
IL1-4/WTpooled0.892350.834
WT/WTpooled1.496361

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.779350.216

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.01061
DC3000/delta hrp 6h0.941140.95
DC3000/delta hrp 12h1.013261
DC3000/delta hrp 24h0.940490.483

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.778120.203

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.991741
Exp 36h0.856030.449
Exp 60h0.778980.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.042181
Var 0h0.668971
Var 12h I row2-row10.86450.467
Var 12h NI row2-row10.977460.906
Var 36h I row2-row10.871330.575
Var 36h NI row2-row11.096740.482
Var 60h I row2-row11.280280.562
Var 60h NI row2-row10.959021
Time course 0hI-0hNI1.119760.603
Time course 12hI-12hNI1.043640.743
Time course 36hI-36hNI0.843330.035
Time course 60hI-60hNI0.4060.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.988830.722
transgenic ySAMdc/azygous control (breaker)1.592590.178
transgenic ySAMdc/azygous control (red)0.973631

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.003260.909

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.107441

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.768240.093
Manapal/WT (break)1.485380.14
Manapal/WT (red)1.215720.413