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Expression of 1-1-8.2.14.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.11390.893
27DAP/17DAP1.384620.714
39DAP/27DAP1.566820.214
41DAP/39DAP1.308050.398
42DAP/41DAP1.530390.114
43DAP/42DAP1.177841
47DAP/43DAP1.026640.895
52DAP/47DAP0.853780.609
57DAP/52DAP0.976910.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.809530.027
17DAP/reference1.053140.442
27DAP/reference0.83210.041
39DAP/reference0.977570.691
41DAP/reference1.067640.808
42DAP/reference0.855080.072
43DAP/reference0.987240.785
47DAP/reference0.989090.535
52DAP/reference1.039150.951
57DAP/reference0.961580.456

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.912710.442
27DAP/17DAP1.023340.976
39DAP/27DAP1.008910.832
41DAP/39DAP0.943850.764
42DAP/41DAP1.050020.999
43DAP/42DAP1.188050.192
47DAP/43DAP1.038170.817
52DAP/47DAP0.93880.546
57DAP/52DAP0.810360.145
57DAP/7DAP0.916111

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.107990.257
17DAP/reference0.858760.082
27DAP/reference0.943530.264
39DAP/reference1.104510.779
41DAP/reference1.003110.709
42DAP/reference1.12060.308
43DAP/reference1.15260.093
47DAP/reference1.080770.337
52DAP/reference0.912270.106
57DAP/reference0.9450.26

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.946810.518
17DAP/reference0.773650.068
27DAP/reference0.774860.115
39DAP/reference0.715130.022
41DAP/reference0.859970.11
42DAP/reference0.795630.073
43DAP/reference0.841270.135
47DAP/reference0.840540.043
52DAP/reference0.719480.008
57DAP/reference0.881120.243

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.833110.046
17DAP/reference0.98470.696
27DAP/reference1.192760.143
39DAP/reference1.167710.245
41DAP/reference0.911180.331
42DAP/reference1.200380.121
43DAP/reference1.35550.1
47DAP/reference1.154310.443
52DAP/reference1.125810.405
57DAP/reference0.824620.165

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.103471
26DAP/20DAP0.958251
34DAP/26DAP1.114651
51DAP/34DAP1.110520.402
52DAP/51DAP1.11630.606
53DAP/52DAP1.163130.58
55DAP/53DAP1.052990.948
57DAP/55DAP0.863480.366
62DAP/57DAP2.888340.833
68DAP/62DAP0.83160.505
68DAP/14DAP0.863921

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.474540.064

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.523450.025
Immature Eggplant/Mature Eggplant8.699830.05
Ripe Pepper/Ripe Tomato0.242730.224
Mature Eggplant/Ripe Tomato0.56771

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.27790.574
1-1-2/M821.099791
12-2/M820.929380.955
12-4/M821.352741
1-3/M821.307090.26
2-1-1/M821.617990.403
2-1/M821.589911
2-6/M821.283350.374
3-2/M821.14988N/A
4-1-1/M821.403270.998
4-1/M821.28391
4-3-2/M821.56250.241
4-3/M821.540030.268
5-3/M821.116361
6-2/M822.135490.253
6-3/M820.940181
7-1/M821.003N/A
7-2/M820.68386N/A
9-3-2/M821.19283N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.903010.243
IL2-6/WTpooled1.006061
IL7-5/WTpooled1.270960.635
IL7-3/WTpooled0.913590.418
IL12-4/WTpooled0.937260.71
IL1-4/WTpooled0.950151
WT/WTpooled0.971521

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.877850.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.373410.921
DC3000/delta hrp 6h1.061941
DC3000/delta hrp 12h0.989821
DC3000/delta hrp 24h1.505580.062

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.48980.598
DC3000 delta B/DC3000 delta AB0.97320.873

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.023621
Exp 36h1.024481
Exp 60h1.137041

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025591
Var 0h0.81380.933
Var 12h I row2-row10.801880.467
Var 12h NI row2-row11.052680.34
Var 36h I row2-row11.326770.601
Var 36h NI row2-row11.197981
Var 60h I row2-row11.0031
Var 60h NI row2-row10.980981
Time course 0hI-0hNI1.023651
Time course 12hI-12hNI0.967070.776
Time course 36hI-36hNI1.126450.056
Time course 60hI-60hNI2.12680.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.952620.409
transgenic ySAMdc/azygous control (breaker)1.172910.248
transgenic ySAMdc/azygous control (red)1.219520.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.087880.041

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.972730.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.288320.14
Manapal/WT (break)0.701061
Manapal/WT (red)0.812160.274