Tomato Functional Genomics Database (TFGD)

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Expression of 1-1-8.2.15.2

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.00308	0.891
27DAP/17DAP	1.0531	1
39DAP/27DAP	1.22404	0.511
41DAP/39DAP	1.1496	0.642
42DAP/41DAP	1.52366	0.626
43DAP/42DAP	1.02995	0.937
47DAP/43DAP	0.85915	0.522
52DAP/47DAP	1.16745	0.832
57DAP/52DAP	0.98609	0.976

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.9983	0.771
17DAP/reference	1.07212	0.096
27DAP/reference	1.04188	0.66
39DAP/reference	1.00146	1
41DAP/reference	1.11454	0.158
42DAP/reference	1.00994	0.963
43DAP/reference	1.03636	0.495
47DAP/reference	0.96832	0.322
52DAP/reference	0.87211	0.105
57DAP/reference	0.94312	0.106

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.99483	0.871
27DAP/17DAP	0.98207	0.919
39DAP/27DAP	1.11818	0.514
41DAP/39DAP	1.04289	0.887
42DAP/41DAP	0.97952	0.781
43DAP/42DAP	0.96817	0.709
47DAP/43DAP	1.05589	0.798
52DAP/47DAP	1.03748	0.919
57DAP/52DAP	1.02218	0.941
57DAP/7DAP	1.02215	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.83631	0.115
17DAP/reference	0.84575	0.014
27DAP/reference	0.81908	0.01
39DAP/reference	0.88026	0.039
41DAP/reference	0.89512	0.064
42DAP/reference	0.89196	0.035
43DAP/reference	0.81372	0.011
47DAP/reference	0.90306	0.293
52DAP/reference	0.76985	0.035
57DAP/reference	0.81721	0.014

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.04944	0.33
17DAP/reference	1.02646	0.723
27DAP/reference	0.96462	0.467
39DAP/reference	1.03664	0.868
41DAP/reference	1.03724	0.925
42DAP/reference	1.01354	1
43DAP/reference	1.0975	0.308
47DAP/reference	1.09875	0.108
52DAP/reference	1.05016	0.417
57DAP/reference	1.0311	0.868

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.8226	0.061
17DAP/reference	0.97596	0.658
27DAP/reference	0.85478	0.097
39DAP/reference	0.83885	0.033
41DAP/reference	0.93822	0.417
42DAP/reference	0.84472	0.071
43DAP/reference	0.89275	0.143
47DAP/reference	1.10377	0.034
52DAP/reference	0.80304	0.184
57DAP/reference	0.80201	0.087

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.0076	0.966
26DAP/20DAP	0.92291	0.512
34DAP/26DAP	0.98174	0.991
51DAP/34DAP	0.81294	0.121
52DAP/51DAP	0.97614	1
53DAP/52DAP	0.97344	0.868
55DAP/53DAP	1.01607	0.982
57DAP/55DAP	0.86637	0.41
62DAP/57DAP	1.03782	0.868
68DAP/62DAP	1.08494	0.885
68DAP/14DAP	1.27752	0.346

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.9434	0.443

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.17215	0.089
Mature Green Tomato/Ripe Tomato	0.84668	0.256
Immature Eggplant/Mature Eggplant	1.2497	0.398
Ripe Pepper/Ripe Tomato	0.49362	0.293
Mature Eggplant/Ripe Tomato	0.77249	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.98556	0.961
1-1-2/M82	0.96596	1
12-2/M82	1.02562	1
12-4/M82	1.01206	1
1-3/M82	0.96062	0.501
2-1-1/M82	1.07163	1
2-1/M82	1.28986	1
2-6/M82	0.99737	1
3-2/M82	1.01943	N/A
4-1-1/M82	1.11559	1
4-1/M82	0.68093	1
4-3-2/M82	0.85815	0.698
4-3/M82	0.96568	1
5-3/M82	1.03857	1
6-2/M82	1.04983	1
6-3/M82	0.99089	1
7-1/M82	1.08631	0.598
7-2/M82	1.00356	1
9-3-2/M82	0.90165	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.94397	1
IL2-6/WTpooled	1.2488	0.584
IL7-5/WTpooled	0.71069	N/A
IL7-3/WTpooled	1.01542	1
IL12-4/WTpooled	1.07875	0.624
IL1-4/WTpooled	0.73728	N/A
WT/WTpooled	0.97308	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.20718	0.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.9766	1
DC3000/delta hrp 6h	1.13384	1
DC3000/delta hrp 12h	1.01926	1
DC3000/delta hrp 24h	0.95487	0.769

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.18029	0.042
DC3000 delta B/DC3000 delta AB	1.03158	0.738

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.9836	1
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.96388	1
Var 0h	1.08388	1
Var 12h I row2-row1	1.00933	1
Var 12h NI row2-row1	0.95061	0.906
Var 36h I row2-row1	0.87728	0.575
Var 36h NI row2-row1	0.84767	0.584
Var 60h I row2-row1	1.36163	0.562
Var 60h NI row2-row1	1.24979	0.904
Time course 0hI-0hNI	1.09806	0.764
Time course 12hI-12hNI	1.05159	0.746
Time course 36hI-36hNI	1.02261	0.881
Time course 60hI-60hNI	1.40669	0.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.02004	0.431
transgenic ySAMdc/azygous control (breaker)	0.95822	0.251
transgenic ySAMdc/azygous control (red)	1.01249	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.02235	0.223

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.02511	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.84408	0.172
Manapal/WT (break)	0.76803	0.333
Manapal/WT (red)	0.99641	1