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Expression of 1-1-8.2.19.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.193140.523
27DAP/17DAP1.10960.883
39DAP/27DAP0.970570.719
41DAP/39DAP0.910060.627
42DAP/41DAP1.008661
43DAP/42DAP0.927180.806
47DAP/43DAP1.134990.68
52DAP/47DAP0.865980.623
57DAP/52DAP1.19880.95

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.116280.334
17DAP/reference1.09540.384
27DAP/reference1.116580.548
39DAP/reference1.21030.174
41DAP/reference1.152380.855
42DAP/reference1.573920.001
43DAP/reference1.33187N/A
47DAP/reference1.500660.275
52DAP/reference1.542030.272
57DAP/reference1.377220.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.508610.052
27DAP/17DAP0.982850.887
39DAP/27DAP1.009111
41DAP/39DAP0.890310.412
42DAP/41DAP1.09790.495
43DAP/42DAP0.785430.024
47DAP/43DAP1.012130.973
52DAP/47DAP0.996850.969
57DAP/52DAP1.022921
57DAP/7DAP0.701121

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.863670.115
17DAP/reference0.859190.082
27DAP/reference0.818710.011
39DAP/reference0.709980.011
41DAP/reference0.880460.098
42DAP/reference0.91410.2
43DAP/reference0.716480.011
47DAP/reference1.04131
52DAP/reference0.694680.014
57DAP/reference0.598010.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.028731
17DAP/reference1.410090.024
27DAP/reference1.749710.012
39DAP/reference1.479280.015
41DAP/reference1.875990.006
42DAP/reference1.629020.02
43DAP/reference1.200430.239
47DAP/reference1.354490.008
52DAP/reference1.3550.006
57DAP/reference1.21510.567

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.987910.566
17DAP/reference1.0780.767
27DAP/reference0.727970.052
39DAP/reference0.78950.076
41DAP/reference0.888850.264
42DAP/reference1.135930.816
43DAP/reference0.980330.523
47DAP/reference1.39340.037
52DAP/reference0.871640.342
57DAP/reference1.661670.072

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.898230.611
26DAP/20DAP1.276620.158
34DAP/26DAP1.147560.819
51DAP/34DAP0.797790.069
52DAP/51DAP1.097540.542
53DAP/52DAP0.805550.138
55DAP/53DAP0.894390.462
57DAP/55DAP1.003890.909
62DAP/57DAP0.90540.681
68DAP/62DAP1.337730.813
68DAP/14DAP1.38850.541

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.9130.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.49719N/A
Mature Green Tomato/Ripe Tomato1.095610.166
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.354080.224
Mature Eggplant/Ripe Tomato0.880591

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.96090.944
1-1-2/M821.042021
12-2/M821.121141
12-4/M821.110051
1-3/M821.099851
2-1-1/M821.057830.764
2-1/M821.093961
2-6/M821.030891
3-2/M820.92186N/A
4-1-1/M821.114281
4-1/M821.182120.853
4-3-2/M821.028381
4-3/M821.128891
5-3/M821.118910.572
6-2/M821.002391
6-3/M821.023161
7-1/M821.070781
7-2/M820.961430.881
9-3-2/M821.307641

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.272970.277
IL2-6/WTpooled0.806110.348
IL7-5/WTpooled1.470491
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.972841
IL1-4/WTpooled1.151461
WT/WTpooled1.017561

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.148961

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.025850.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.743761
DC3000/delta hrp 24h0.982280.934

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.017651
DC3000 delta B/DC3000 delta AB1.090170.42

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.349780.223
Exp 36h1.06961
Exp 60h1.429230.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.018631
Var 0h1.056381
Var 12h I row2-row11.091880.613
Var 12h NI row2-row11.032461
Var 36h I row2-row10.873560.575
Var 36h NI row2-row11.009591
Var 60h I row2-row10.820540.582
Var 60h NI row2-row11.091220.904
Time course 0hI-0hNI1.022180.852
Time course 12hI-12hNI1.023330.754
Time course 36hI-36hNI1.099020.28
Time course 60hI-60hNI0.871460.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.990570.931
transgenic ySAMdc/azygous control (breaker)0.893090.49
transgenic ySAMdc/azygous control (red)0.960661

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.872920.146

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.511840.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.806560.172
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.860890.424