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Expression of 1-1-8.2.3.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.972330.752
27DAP/17DAP1.032630.92
39DAP/27DAP1.133120.903
41DAP/39DAP0.961180.825
42DAP/41DAP0.992311
43DAP/42DAP1.052211
47DAP/43DAP1.213440.223
52DAP/47DAP0.977630.897
57DAP/52DAP1.242530.817

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.790820.097
17DAP/reference0.686380.147
27DAP/reference0.918580.265
39DAP/reference0.960940.575
41DAP/reference0.880920.434
42DAP/reference0.846080.002
43DAP/reference0.517740.014
47DAP/reference1.173530.031
52DAP/reference1.063820.663
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.045850.797
27DAP/17DAP1.363160.233
39DAP/27DAP1.150080.596
41DAP/39DAP0.924470.822
42DAP/41DAP1.124650.886
43DAP/42DAP0.998610.991
47DAP/43DAP1.010170.973
52DAP/47DAP1.067860.785
57DAP/52DAP0.987650.81
57DAP/7DAP0.893431

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.394730.083
17DAP/reference1.158590.18
27DAP/reference1.034560.974
39DAP/reference1.07990.371
41DAP/reference1.045230.745
42DAP/reference1.080230.889
43DAP/reference1.12030.241
47DAP/reference1.181930.027
52DAP/reference0.958980.398
57DAP/reference0.931540.034

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.751090.011
17DAP/reference0.696580.004
27DAP/reference0.878780.123
39DAP/reference0.90850.083
41DAP/reference0.849670.053
42DAP/reference0.843280.067
43DAP/reference0.796510.084
47DAP/reference0.963570.311
52DAP/reference0.885380.121
57DAP/reference0.832340.058

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.121750.051
17DAP/reference0.847050.221
27DAP/reference1.147070.621
39DAP/reference1.001670.819
41DAP/reference0.924920.264
42DAP/reference1.086820.73
43DAP/reference1.218410.128
47DAP/reference1.216180.11
52DAP/reference1.55790.033
57DAP/reference1.405780.023

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.038430.966
26DAP/20DAP1.171850.549
34DAP/26DAP0.931970.834
51DAP/34DAP1.489170.049
52DAP/51DAP1.010311
53DAP/52DAP0.865330.393
55DAP/53DAP1.00060.876
57DAP/55DAP1.407680.525
62DAP/57DAPN/AN/A
68DAP/62DAP0.5756N/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.09850.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.900730.447
Mature Green Tomato/Ripe Tomato1.222620.881
Immature Eggplant/Mature Eggplant1.409170.052
Ripe Pepper/Ripe Tomato0.801340.224
Mature Eggplant/Ripe Tomato0.551771

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.943530.736
1-1-2/M821.137831
12-2/M821.005191
12-4/M821.102941
1-3/M821.527290.479
2-1-1/M821.057710.764
2-1/M821.127571
2-6/M821.018491
3-2/M821.038931
4-1-1/M821.212311
4-1/M821.600051
4-3-2/M821.106211
4-3/M821.081411
5-3/M821.050491
6-2/M821.078751
6-3/M821.072451
7-1/M820.964611
7-2/M821.290550.318
9-3-2/M821.376311

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.046120.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.355611
IL12-4/WTpooled1.069760.522
IL1-4/WTpooled0.9684N/A
WT/WTpooled1.012831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.115710.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.142710.692
DC3000/delta hrp 6h0.8640.95
DC3000/delta hrp 12h0.960651
DC3000/delta hrp 24h1.301410.074

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.10563N/A
DC3000 delta B/DC3000 delta AB1.329910.124

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.360871
Exp 36h1.495540.693
Exp 60h1.719240.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004131
Var 0h0.469240.933
Var 12h I row2-row11.164490.406
Var 12h NI row2-row11.193980.266
Var 36h I row2-row11.263490.368
Var 36h NI row2-row11.12881
Var 60h I row2-row10.749330.293
Var 60h NI row2-row10.919611
Time course 0hI-0hNI0.989310.994
Time course 12hI-12hNI1.041960.88
Time course 36hI-36hNI1.480540.006
Time course 60hI-60hNI4.024680.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.97190.662
transgenic ySAMdc/azygous control (breaker)1.42540.166
transgenic ySAMdc/azygous control (red)1.167650.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.221740.213

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.846840.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.922970.333
Manapal/WT (red)0.965150.863