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Expression of 1-1-8.2.6.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.897870.486
27DAP/17DAP1.034440.911
39DAP/27DAP1.129870.857
41DAP/39DAP1.147170.822
42DAP/41DAP1.521420.348
43DAP/42DAP1.262570.861
47DAP/43DAP0.864380.555
52DAP/47DAP1.340250.545
57DAP/52DAP1.441840.77

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.886740.194
17DAP/reference1.127170.442
27DAP/reference1.074490.357
39DAP/reference1.042680.639
41DAP/reference1.004331
42DAP/reference0.949860.25
43DAP/reference1.120810.287
47DAP/reference1.022380.937
52DAP/reference0.894040.3
57DAP/reference1.162530.31

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.107560.334
27DAP/17DAP1.321290.151
39DAP/27DAP1.232050.197
41DAP/39DAP1.210070.88
42DAP/41DAP1.020950.999
43DAP/42DAP0.985920.875
47DAP/43DAP0.981350.919
52DAP/47DAP0.93310.778
57DAP/52DAP1.008170.926
57DAP/7DAP0.728871

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.051560.65
17DAP/reference1.055851
27DAP/reference1.196780.073
39DAP/reference0.965170.474
41DAP/reference1.202820.136
42DAP/reference0.878290.106
43DAP/reference1.159480.386
47DAP/reference1.153360.43
52DAP/reference1.490560.041
57DAP/reference1.250620.049

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.897930.457
17DAP/reference1.123940.151
27DAP/reference0.934740.452
39DAP/reference0.746270.011
41DAP/reference0.951460.373
42DAP/reference0.859750.15
43DAP/reference0.993080.692
47DAP/reference1.075430.4
52DAP/reference0.973750.537
57DAP/reference1.048080.789

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.9630.526
17DAP/reference1.059410.876
27DAP/reference1.337150.085
39DAP/reference1.241220.134
41DAP/reference1.060620.818
42DAP/reference1.051940.979
43DAP/reference1.252180.572
47DAP/reference0.812290.183
52DAP/reference1.235640.247
57DAP/reference1.058440.867

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.058611
26DAP/20DAP1.25490.674
34DAP/26DAP1.039111
51DAP/34DAP1.258830.666
52DAP/51DAP0.796241
53DAP/52DAP1.258610.384
55DAP/53DAP0.880530.563
57DAP/55DAP1.016370.947
62DAP/57DAPN/AN/A
68DAP/62DAP1.30070.707
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.123390.306

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.12954N/A
Mature Green Tomato/Ripe Tomato1.166030.948
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.782620.293
Mature Eggplant/Ripe Tomato0.923941

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.941221
12-2/M82N/AN/A
12-4/M820.902451
1-3/M821.001191
2-1-1/M820.920550.465
2-1/M82N/AN/A
2-6/M820.95298N/A
3-2/M82N/AN/A
4-1-1/M820.93305N/A
4-1/M820.53528N/A
4-3-2/M820.938791
4-3/M821.21358N/A
5-3/M821.199730.572
6-2/M821.108440.235
6-3/M821.023361
7-1/M821.10308N/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.92421
IL2-6/WTpooled1.013831
IL7-5/WTpooled1.205040.792
IL7-3/WTpooled1.155881
IL12-4/WTpooled1.135880.466
IL1-4/WTpooled0.944460.457
WT/WTpooled1.002711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.313160.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.961671
DC3000/delta hrp 6h0.707310.95
DC3000/delta hrp 12h1.355171
DC3000/delta hrp 24h1.293180.356

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.17612N/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.894911
Exp 36h2.438761
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.972331
Var 0h0.845690.933
Var 12h I row2-row11.294430.296
Var 12h NI row2-row11.139641
Var 36h I row2-row11.112510.742
Var 36h NI row2-row10.91690.61
Var 60h I row2-row10.874570.582
Var 60h NI row2-row11.042840.904
Time course 0hI-0hNI0.989010.994
Time course 12hI-12hNI0.992020.991
Time course 36hI-36hNI1.040440.651
Time course 60hI-60hNI1.58160.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.078940.431
transgenic ySAMdc/azygous control (breaker)1.170851
transgenic ySAMdc/azygous control (red)1.091641

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.114460.042

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.942510.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.82590.172
Manapal/WT (break)1.06351
Manapal/WT (red)1.047721