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Expression of 1-1-8.2.9.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.589570.015
27DAP/17DAP1.249510.755
39DAP/27DAP1.391730.27
41DAP/39DAP1.137490.624
42DAP/41DAP1.222050.626
43DAP/42DAP1.272521
47DAP/43DAP0.923010.696
52DAP/47DAP0.594810.109
57DAP/52DAP1.068240.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.11230.662
17DAP/reference0.858740.138
27DAP/reference0.806860.045
39DAP/reference0.857410.24
41DAP/reference0.936930.434
42DAP/reference1.154410.151
43DAP/reference1.072940.445
47DAP/reference1.110650.353
52DAP/reference0.860440.06
57DAP/reference0.963840.415

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.774350.135
27DAP/17DAP1.07970.751
39DAP/27DAP1.487770.071
41DAP/39DAP0.768280.015
42DAP/41DAP1.128480.74
43DAP/42DAP1.163880.382
47DAP/43DAP0.861360.259
52DAP/47DAP0.733020.089
57DAP/52DAP0.809780.463
57DAP/7DAP0.789041

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.126370.292
17DAP/reference0.889470.167
27DAP/reference0.92660.185
39DAP/reference0.917610.17
41DAP/reference1.041510.745
42DAP/reference0.996260.641
43DAP/reference0.87120.029
47DAP/reference0.988650.671
52DAP/reference0.853260.031
57DAP/reference0.797820.043

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.292440.074
17DAP/reference1.16920.257
27DAP/reference1.095070.648
39DAP/reference0.885230.095
41DAP/reference0.837430.048
42DAP/reference1.017351
43DAP/reference1.169810.104
47DAP/reference1.052440.751
52DAP/reference0.69670.004
57DAP/reference0.973080.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.133180.338
17DAP/reference0.910530.358
27DAP/reference0.835910.029
39DAP/reference0.86620.015
41DAP/reference0.86880.07
42DAP/reference0.992270.671
43DAP/reference1.074540.768
47DAP/reference0.900510.24
52DAP/reference0.73320.097
57DAP/reference0.918440.326

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.42958N/A
26DAP/20DAP0.900481
34DAP/26DAP0.856760.565
51DAP/34DAP0.950.799
52DAP/51DAP1.453580.446
53DAP/52DAP1.087360.868
55DAP/53DAP1.196680.951
57DAP/55DAP0.80820.443
62DAP/57DAP0.989710.994
68DAP/62DAP0.749320.429
68DAP/14DAP0.36942N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker12.86310.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.837370.095
Immature Eggplant/Mature Eggplant1.20895N/A
Ripe Pepper/Ripe Tomato0.144110.293
Mature Eggplant/Ripe Tomato0.094890.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.945010.944
1-1-2/M821.098541
12-2/M821.019721
12-4/M821.187621
1-3/M821.350650.277
2-1-1/M821.132870.764
2-1/M821.001021
2-6/M821.013320.594
3-2/M821.158380.717
4-1-1/M821.265961
4-1/M821.680750.853
4-3-2/M821.215231
4-3/M820.912380.404
5-3/M820.96921
6-2/M821.106881
6-3/M820.999221
7-1/M821.054870.992
7-2/M821.203281
9-3-2/M820.94589N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.047980.493
IL2-6/WTpooled1.009541
IL7-5/WTpooled1.1820.792
IL7-3/WTpooled1.064091
IL12-4/WTpooled1.190390.516
IL1-4/WTpooled0.9491
WT/WTpooled1.023791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.242851

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.052660.921
DC3000/delta hrp 6h0.909570.95
DC3000/delta hrp 12h0.787351
DC3000/delta hrp 24h1.939160.043

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.521970.042
DC3000 delta B/DC3000 delta AB1.300440.246

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.851871
Exp 36h1.413910.489
Exp 60h1.210270.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.991181
Var 0h1.899320.782
Var 12h I row2-row11.034711
Var 12h NI row2-row11.052321
Var 36h I row2-row10.931041
Var 36h NI row2-row11.171711
Var 60h I row2-row10.697020.306
Var 60h NI row2-row11.072980.904
Time course 0hI-0hNI0.989920.988
Time course 12hI-12hNI0.981710.906
Time course 36hI-36hNI1.14450.19
Time course 60hI-60hNI2.680760.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.826610.301
transgenic ySAMdc/azygous control (breaker)1.140930.172
transgenic ySAMdc/azygous control (red)0.991731

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.648320.048

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.075471

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.89061
Manapal/WT (break)0.995891
Manapal/WT (red)0.949790.607