Expression of 1-1-8.3.10.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91232 | 0.551 |
27DAP/17DAP | 1.07956 | 0.885 |
39DAP/27DAP | 1.69519 | 0.374 |
41DAP/39DAP | 1.09864 | 0.988 |
42DAP/41DAP | 0.75725 | 0.774 |
43DAP/42DAP | 0.82231 | 0.751 |
47DAP/43DAP | 0.97714 | 0.804 |
52DAP/47DAP | 1.40414 | 0.43 |
57DAP/52DAP | 0.7881 | 0.727 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04192 | 0.685 |
17DAP/reference | 0.94402 | 0.503 |
27DAP/reference | 0.8817 | 0.249 |
39DAP/reference | 1.14108 | 0.335 |
41DAP/reference | 1.04279 | 0.808 |
42DAP/reference | 0.90871 | 0.107 |
43DAP/reference | 0.89194 | 0.247 |
47DAP/reference | 0.91681 | 0.224 |
52DAP/reference | 0.83084 | 0.042 |
57DAP/reference | 0.91742 | 0.112 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83124 | 0.289 |
27DAP/17DAP | 1.15725 | 0.423 |
39DAP/27DAP | 0.99662 | 1 |
41DAP/39DAP | 1.25836 | 0.735 |
42DAP/41DAP | 1.04116 | 1 |
43DAP/42DAP | 0.93303 | 0.503 |
47DAP/43DAP | 1.40625 | 0.026 |
52DAP/47DAP | 1.13772 | 0.669 |
57DAP/52DAP | 1.27054 | 0.611 |
57DAP/7DAP | 1.2946 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33369 | 0.048 |
17DAP/reference | 1.20285 | 0.016 |
27DAP/reference | 1.1693 | 0.073 |
39DAP/reference | 0.94305 | 0.17 |
41DAP/reference | 1.06881 | 0.655 |
42DAP/reference | 1.01541 | 1 |
43DAP/reference | 0.92019 | 0.166 |
47DAP/reference | 0.93397 | 0.504 |
52DAP/reference | 0.87339 | 0.046 |
57DAP/reference | 0.79351 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10282 | 0.758 |
17DAP/reference | 0.96377 | 0.447 |
27DAP/reference | 0.92481 | 0.327 |
39DAP/reference | 0.91058 | 0.189 |
41DAP/reference | 0.87604 | 0.152 |
42DAP/reference | 1.03995 | 1 |
43DAP/reference | 1.69218 | 0.024 |
47DAP/reference | 1.22886 | 0.052 |
52DAP/reference | 1.05255 | 1 |
57DAP/reference | 1.04409 | 0.887 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3771 | 0.019 |
17DAP/reference | 1.25038 | 0.212 |
27DAP/reference | 0.96873 | 0.465 |
39DAP/reference | 0.98212 | 0.504 |
41DAP/reference | 1.02121 | 1 |
42DAP/reference | 0.98862 | 0.816 |
43DAP/reference | 0.9584 | 0.468 |
47DAP/reference | 1.04019 | 0.994 |
52DAP/reference | 0.91259 | 0.268 |
57DAP/reference | 0.89024 | 0.134 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98999 | 1 |
26DAP/20DAP | 0.86818 | 1 |
34DAP/26DAP | 1.67205 | 0.304 |
51DAP/34DAP | 0.79704 | |
52DAP/51DAP | 0.99827 | 1 |
53DAP/52DAP | 0.65688 | 0.245 |
55DAP/53DAP | 1.2971 | 0.306 |
57DAP/55DAP | 1.09321 | 0.986 |
62DAP/57DAP | 1.06655 | 0.833 |
68DAP/62DAP | 1.06502 | 0.956 |
68DAP/14DAP | 1.53034 | 0.85 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.56083 | 0.017 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.70253 | 0.086 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.66528 | |
Mature Eggplant/Ripe Tomato | 1.2631 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04787 | 1 |
1-1-2/M82 | 0.7856 | 1 |
12-2/M82 | 1.16847 | 1 |
12-4/M82 | 0.94471 | 1 |
1-3/M82 | 1.04012 | |
2-1-1/M82 | 1.21689 | 0.457 |
2-1/M82 | 1.1028 | |
2-6/M82 | 1.08768 | 0.695 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.97652 | 1 |
4-1/M82 | 0.67522 | 1 |
4-3-2/M82 | 0.92676 | 1 |
4-3/M82 | 0.92992 | 1 |
5-3/M82 | 0.96894 | 1 |
6-2/M82 | 0.89218 | 1 |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.03956 | 1 |
7-2/M82 | 0.85924 | 0.796 |
9-3-2/M82 | 1.04854 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.23308 | 0.493 |
IL2-6/WTpooled | 3.68861 | 0.427 |
IL7-5/WTpooled | 1.43406 | 1 |
IL7-3/WTpooled | 0.78878 | 0.294 |
IL12-4/WTpooled | 1.24766 | 0.424 |
IL1-4/WTpooled | 1.13221 | 1 |
WT/WTpooled | 1.07813 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.69037 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06566 | 0.921 |
DC3000/delta hrp 6h | 0.88417 | 0.95 |
DC3000/delta hrp 12h | 1.025 | 1 |
DC3000/delta hrp 24h | 0.76041 | 0.047 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15569 | 1 |
Exp 36h | 2.39763 | 0.489 |
Exp 60h | 2.42886 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04625 | 1 |
Var 0h | 1.07969 | 0.936 |
Var 12h I row2-row1 | 1.27403 | 0.242 |
Var 12h NI row2-row1 | 0.96311 | 0.438 |
Var 36h I row2-row1 | 1.04605 | 1 |
Var 36h NI row2-row1 | 0.78547 | 0.584 |
Var 60h I row2-row1 | 0.82871 | 0.439 |
Var 60h NI row2-row1 | 0.92644 | 0.866 |
Time course 0hI-0hNI | 1.12887 | 0.574 |
Time course 12hI-12hNI | 2.18033 | 0.005 |
Time course 36hI-36hNI | 3.06542 | 0.005 |
Time course 60hI-60hNI | 10.3966 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.32166 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 1.01496 | 1 |
transgenic ySAMdc/azygous control (red) | 1.04707 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00172 | 0.958 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.07451 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.51907 | 0.105 |
Manapal/WT (break) | 0.92769 | 1 |
Manapal/WT (red) | 1.03095 | 1 |
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