Expression of 1-1-8.3.10.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.912320.551
27DAP/17DAP1.079560.885
39DAP/27DAP1.695190.374
41DAP/39DAP1.098640.988
42DAP/41DAP0.757250.774
43DAP/42DAP0.822310.751
47DAP/43DAP0.977140.804
52DAP/47DAP1.404140.43
57DAP/52DAP0.78810.727

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.041920.685
17DAP/reference0.944020.503
27DAP/reference0.88170.249
39DAP/reference1.141080.335
41DAP/reference1.042790.808
42DAP/reference0.908710.107
43DAP/reference0.891940.247
47DAP/reference0.916810.224
52DAP/reference0.830840.042
57DAP/reference0.917420.112

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.831240.289
27DAP/17DAP1.157250.423
39DAP/27DAP0.996621
41DAP/39DAP1.258360.735
42DAP/41DAP1.041161
43DAP/42DAP0.933030.503
47DAP/43DAP1.406250.026
52DAP/47DAP1.137720.669
57DAP/52DAP1.270540.611
57DAP/7DAP1.29460.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.333690.048
17DAP/reference1.202850.016
27DAP/reference1.16930.073
39DAP/reference0.943050.17
41DAP/reference1.068810.655
42DAP/reference1.015411
43DAP/reference0.920190.166
47DAP/reference0.933970.504
52DAP/reference0.873390.046
57DAP/reference0.793510.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.102820.758
17DAP/reference0.963770.447
27DAP/reference0.924810.327
39DAP/reference0.910580.189
41DAP/reference0.876040.152
42DAP/reference1.039951
43DAP/reference1.692180.024
47DAP/reference1.228860.052
52DAP/reference1.052551
57DAP/reference1.044090.887

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.37710.019
17DAP/reference1.250380.212
27DAP/reference0.968730.465
39DAP/reference0.982120.504
41DAP/reference1.021211
42DAP/reference0.988620.816
43DAP/reference0.95840.468
47DAP/reference1.040190.994
52DAP/reference0.912590.268
57DAP/reference0.890240.134

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.989991
26DAP/20DAP0.868181
34DAP/26DAP1.672050.304
51DAP/34DAP0.79704
52DAP/51DAP0.998271
53DAP/52DAP0.656880.245
55DAP/53DAP1.29710.306
57DAP/55DAP1.093210.986
62DAP/57DAP1.066550.833
68DAP/62DAP1.065020.956
68DAP/14DAP1.530340.85

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.560830.017

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.702530.086
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.66528
Mature Eggplant/Ripe Tomato1.26310.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.047871
1-1-2/M820.78561
12-2/M821.168471
12-4/M820.944711
1-3/M821.04012
2-1-1/M821.216890.457
2-1/M821.1028
2-6/M821.087680.695
3-2/M82N/AN/A
4-1-1/M820.976521
4-1/M820.675221
4-3-2/M820.926761
4-3/M820.929921
5-3/M820.968941
6-2/M820.892181
6-3/M82N/AN/A
7-1/M821.039561
7-2/M820.859240.796
9-3-2/M821.04854

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.233080.493
IL2-6/WTpooled3.688610.427
IL7-5/WTpooled1.434061
IL7-3/WTpooled0.788780.294
IL12-4/WTpooled1.247660.424
IL1-4/WTpooled1.132211
WT/WTpooled1.078131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.690370.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.065660.921
DC3000/delta hrp 6h0.884170.95
DC3000/delta hrp 12h1.0251
DC3000/delta hrp 24h0.760410.047

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.155691
Exp 36h2.397630.489
Exp 60h2.428860.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.046251
Var 0h1.079690.936
Var 12h I row2-row11.274030.242
Var 12h NI row2-row10.963110.438
Var 36h I row2-row11.046051
Var 36h NI row2-row10.785470.584
Var 60h I row2-row10.828710.439
Var 60h NI row2-row10.926440.866
Time course 0hI-0hNI1.128870.574
Time course 12hI-12hNI2.180330.005
Time course 36hI-36hNI3.065420.005
Time course 60hI-60hNI10.39660.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.321660.286
transgenic ySAMdc/azygous control (breaker)1.014961
transgenic ySAMdc/azygous control (red)1.047070.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.001720.958

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.074511

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.519070.105
Manapal/WT (break)0.927691
Manapal/WT (red)1.030951