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Expression of 1-1-8.3.13.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.962930.699
27DAP/17DAP1.03870.89
39DAP/27DAP1.190870.4
41DAP/39DAP0.903390.597
42DAP/41DAP1.09280.941
43DAP/42DAP1.061530.991
47DAP/43DAP0.875370.555
52DAP/47DAP1.028110.989
57DAP/52DAP1.195530.77

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.02850.71
17DAP/reference0.977420.597
27DAP/reference0.978040.497
39DAP/reference0.997120.957
41DAP/reference1.110980.451
42DAP/reference0.985040.359
43DAP/reference0.97220.631
47DAP/reference1.015230.728
52DAP/reference0.996770.668
57DAP/reference1.113790.035

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.0171
27DAP/17DAP1.025020.938
39DAP/27DAP0.992131
41DAP/39DAP0.975350.968
42DAP/41DAP1.095560.425
43DAP/42DAP0.986070.774
47DAP/43DAP0.978980.909
52DAP/47DAP0.833870.142
57DAP/52DAP1.151160.376
57DAP/7DAP0.875091

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.897230.08
17DAP/reference0.967920.447
27DAP/reference1.08470.03
39DAP/reference0.988060.552
41DAP/reference1.049990.593
42DAP/reference1.087420.1
43DAP/reference1.05790.344
47DAP/reference0.997251
52DAP/reference1.08880.197
57DAP/reference1.07710.125

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.003331
17DAP/reference0.954630.26
27DAP/reference1.069530.67
39DAP/reference0.885840.065
41DAP/reference0.961190.357
42DAP/reference1.011011
43DAP/reference0.940150.236
47DAP/reference1.115930.092
52DAP/reference0.965460.407
57DAP/reference1.009151

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.036870.481
17DAP/reference0.984310.696
27DAP/reference1.060230.131
39DAP/reference1.02030.483
41DAP/reference1.061150.249
42DAP/reference0.921130.22
43DAP/reference1.013310.973
47DAP/reference0.971380.478
52DAP/reference1.007920.952
57DAP/reference0.97720.41

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.012580.966
26DAP/20DAP1.10050.855
34DAP/26DAP1.108611
51DAP/34DAP0.96480.743
52DAP/51DAP1.148480.295
53DAP/52DAPN/AN/A
55DAP/53DAPN/AN/A
57DAP/55DAP0.885150.532
62DAP/57DAP1.108440.833
68DAP/62DAP0.98490.885
68DAP/14DAP1.599580.037

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.957980.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.824980.279
Mature Green Tomato/Ripe Tomato0.772520.086
Immature Eggplant/Mature Eggplant1.071650.606
Ripe Pepper/Ripe Tomato1.341480.258
Mature Eggplant/Ripe Tomato1.247110.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.948580.944
1-1-2/M820.951641
12-2/M820.966640.955
12-4/M820.995341
1-3/M820.941110.378
2-1-1/M820.893130.465
2-1/M821.333861
2-6/M820.927471
3-2/M820.943851
4-1-1/M821.006031
4-1/M820.905450.737
4-3-2/M820.972461
4-3/M820.9330.72
5-3/M820.945931
6-2/M821.00171
6-3/M821.025391
7-1/M821.022881
7-2/M820.974960.881
9-3-2/M820.94150.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.30620.395
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.004821
IL12-4/WTpooled1.139790.673
IL1-4/WTpooled1.09478N/A
WT/WTpooled0.973841

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.977181

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.916841
DC3000/delta hrp 6h1.623381
DC3000/delta hrp 12h1.044061
DC3000/delta hrp 24h1.063050.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.231620.042
DC3000 delta B/DC3000 delta AB1.110490.394

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.898741
Exp 36h1.013311
Exp 60h1.138381

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.050331
Var 0h1.022391
Var 12h I row2-row11.217380.406
Var 12h NI row2-row11.063491
Var 36h I row2-row10.761960.805
Var 36h NI row2-row10.903930.478
Var 60h I row2-row10.994751
Var 60h NI row2-row11.179890.904
Time course 0hI-0hNI1.027671
Time course 12hI-12hNI1.061710.743
Time course 36hI-36hNI1.140320.05
Time course 60hI-60hNI1.691670.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.872020.409
transgenic ySAMdc/azygous control (breaker)1.384230.248
transgenic ySAMdc/azygous control (red)1.400870.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.978340.097

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.266960.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.998271
Manapal/WT (break)0.772840.299
Manapal/WT (red)0.850280.315