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Expression of 1-1-8.3.17.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.082840.997
27DAP/17DAP1.166980.839
39DAP/27DAP1.070120.91
41DAP/39DAP0.758340.207
42DAP/41DAP1.003041
43DAP/42DAP0.961410.9
47DAP/43DAP1.523030.361
52DAP/47DAP0.906750.633
57DAP/52DAP0.99510.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.191110.46
17DAP/reference1.094740.442
27DAP/reference1.022910.847
39DAP/reference1.005130.92
41DAP/reference1.100110.287
42DAP/reference1.188390.113
43DAP/reference1.184620.495
47DAP/reference1.087180.84
52DAP/reference1.484920.059
57DAP/reference1.259830.132

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.868740.111
27DAP/17DAP1.020960.967
39DAP/27DAP0.99630.908
41DAP/39DAP1.206840.55
42DAP/41DAP1.061530.947
43DAP/42DAP1.179310.122
47DAP/43DAP1.133160.471
52DAP/47DAP1.106280.619
57DAP/52DAP0.906720.275
57DAP/7DAP2.436171

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.796210.078
17DAP/reference0.873020.192
27DAP/reference0.776740.031
39DAP/reference0.661410.011
41DAP/reference0.926020.341
42DAP/reference0.745910.012
43DAP/reference0.70240.015
47DAP/reference1.146770.537
52DAP/reference0.700890.013
57DAP/reference0.871510.128

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.063131
17DAP/reference1.225580.375
27DAP/reference0.961980.483
39DAP/reference1.157220.164
41DAP/reference1.246650.063
42DAP/reference1.30770.118
43DAP/reference1.458690.276
47DAP/reference1.034940.965
52DAP/reference1.255740.098
57DAP/reference1.015141

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.779240.082
17DAP/reference1.040130.792
27DAP/reference0.944190.416
39DAP/reference0.871850.04
41DAP/reference0.97730.618
42DAP/reference1.058860.802
43DAP/reference1.128290.505
47DAP/reference1.185140.339
52DAP/reference0.763920.186
57DAP/reference1.207120.268

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.089970.966
26DAP/20DAP1.144250.85
34DAP/26DAP1.107310.988
51DAP/34DAP0.970020.911
52DAP/51DAP1.277620.446
53DAP/52DAP1.437270.882
55DAP/53DAP1.068661
57DAP/55DAP1.17890.915
62DAP/57DAP1.190920.515
68DAP/62DAP0.806530.641
68DAP/14DAP0.71787N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.112320.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.222210.632
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.36796N/A
Mature Eggplant/Ripe Tomato0.370820.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.16343N/A
1-1-2/M821.12322N/A
12-2/M82N/AN/A
12-4/M821.13681
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.94808N/A
4-1-1/M82N/AN/A
4-1/M821.74677N/A
4-3-2/M821.389150.241
4-3/M821.191731
5-3/M821.004791
6-2/M821.21415N/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.48165N/A
9-3-2/M821.252041

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.83110.277
IL2-6/WTpooled1.088640.788
IL7-5/WTpooled0.24978N/A
IL7-3/WTpooled1.23751
IL12-4/WTpooled1.066650.646
IL1-4/WTpooled1.096341
WT/WTpooled1.039881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.506990.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.175830.715
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.13960.655

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB9.39619N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.903191
Var 0h1.953750.782
Var 12h I row2-row11.056290.58
Var 12h NI row2-row11.10220.649
Var 36h I row2-row11.041881
Var 36h NI row2-row10.921780.743
Var 60h I row2-row10.836830.439
Var 60h NI row2-row10.890410.818
Time course 0hI-0hNI1.103980.719
Time course 12hI-12hNI1.077770.615
Time course 36hI-36hNI1.253610.019
Time course 60hI-60hNI1.99380.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.823311

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.444310.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.225371
Manapal/WT (break)1.588890.381
Manapal/WT (red)0.733060.199