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Expression of 1-1-8.3.18.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.34280.348
27DAP/17DAP1.461340.714
39DAP/27DAP2.706820.077
41DAP/39DAP0.977560.862
42DAP/41DAP0.59170.397
43DAP/42DAP1.280670.746
47DAP/43DAP1.185030.469
52DAP/47DAP0.811450.539
57DAP/52DAP1.066150.988

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.00341
17DAP/reference1.010050.957
27DAP/reference1.00891
39DAP/reference0.975020.704
41DAP/reference0.849610.154
42DAP/reference0.961670.188
43DAP/reference1.136510.34
47DAP/reference1.034380.817
52DAP/reference1.094330.407
57DAP/reference0.956370.262

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.713630.053
27DAP/17DAP1.300330.18
39DAP/27DAP1.174550.347
41DAP/39DAP0.831290.42
42DAP/41DAP0.948640.712
43DAP/42DAP1.187810.134
47DAP/43DAP1.021970.948
52DAP/47DAP1.008310.975
57DAP/52DAP0.904680.48
57DAP/7DAP1.36150.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.257730.029
17DAP/reference3.348460.006
27DAP/reference3.973590.008
39DAP/reference5.706440.005
41DAP/reference5.951370.009
42DAP/reference7.796450.006
43DAP/reference5.303880.007
47DAP/reference2.636190.057
52DAP/reference2.879270.007
57DAP/reference2.679950.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.145591
17DAP/reference0.66710.01
27DAP/reference1.100060.463
39DAP/reference1.239310.247
41DAP/reference1.722380.005
42DAP/reference1.112170.5
43DAP/reference0.784040.092
47DAP/reference1.0450.749
52DAP/reference0.809560.027
57DAP/reference1.025080.887

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.372410.076
17DAP/reference1.540120.631
27DAP/reference3.041040.019
39DAP/reference4.036860.011
41DAP/reference2.618320.009
42DAP/reference3.807060.007
43DAP/reference2.030.026
47DAP/reference1.160250.443
52DAP/reference4.130550.039
57DAP/reference3.376660.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.886210.997
26DAP/20DAP1.054161
34DAP/26DAP1.067461
51DAP/34DAP1.031450.993
52DAP/51DAP1.076160.776
53DAP/52DAP2.116790.041
55DAP/53DAP0.998720.925
57DAP/55DAP0.630220.043
62DAP/57DAP0.580390.005
68DAP/62DAP1.796720.682
68DAP/14DAP1.05310.826

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.874810.304

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.132440.068
Mature Green Tomato/Ripe Tomato0.865630.487
Immature Eggplant/Mature Eggplant10.57040.05
Ripe Pepper/Ripe Tomato0.826440.224
Mature Eggplant/Ripe Tomato0.236580.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.967630.961
1-1-2/M821.072011
12-2/M820.797870.661
12-4/M820.994581
1-3/M820.96322N/A
2-1-1/M821.194720.439
2-1/M821.35032N/A
2-6/M82N/AN/A
3-2/M821.138390.84
4-1-1/M821.157141
4-1/M821.002121
4-3-2/M820.80409N/A
4-3/M820.819821
5-3/M821.500690.427
6-2/M820.797680.481
6-3/M820.946950.982
7-1/M821.12390.598
7-2/M820.991911
9-3-2/M821.445891

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.069831
IL2-6/WTpooled0.881761
IL7-5/WTpooled0.739261
IL7-3/WTpooled0.787611
IL12-4/WTpooled1.282980.557
IL1-4/WTpooled1.09871
WT/WTpooled1.005261

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.960841

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.925220.868
DC3000/delta hrp 6h0.998560.95
DC3000/delta hrp 12h1.06911
DC3000/delta hrp 24h1.59270.039

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.411340.046
DC3000 delta B/DC3000 delta AB2.010630.118

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.34771
Exp 36h2.093520.489
Exp 60h1.94550.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.255381
Var 0h0.847721
Var 12h I row2-row10.907150.705
Var 12h NI row2-row11.247890.649
Var 36h I row2-row10.969691
Var 36h NI row2-row10.843650.645
Var 60h I row2-row10.958820.832
Var 60h NI row2-row10.813350.756
Time course 0hI-0hNI1.192750.377
Time course 12hI-12hNI1.246130.02
Time course 36hI-36hNI1.892840.007
Time course 60hI-60hNI6.708280.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.194920.571
transgenic ySAMdc/azygous control (breaker)1.096981
transgenic ySAMdc/azygous control (red)0.981511

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.064910.148

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.883540.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.644240.105
Manapal/WT (break)1.128411
Manapal/WT (red)1.289930.413