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Expression of 1-1-8.3.6.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.118560.851
27DAP/17DAP1.579520.479
39DAP/27DAP0.924850.719
41DAP/39DAP1.106770.708
42DAP/41DAP1.02081
43DAP/42DAP1.063961
47DAP/43DAP0.979630.828
52DAP/47DAP1.476850.641
57DAP/52DAP0.688930.527

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.494880.014
17DAP/reference1.745280.019
27DAP/reference1.53110.023
39DAP/reference1.13230.018
41DAP/reference1.780350.014
42DAP/reference1.220850.366
43DAP/reference1.27150.189
47DAP/reference0.965020.366
52DAP/reference0.966760.515
57DAP/reference0.871380.21

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.000090.801
27DAP/17DAP0.975190.887
39DAP/27DAP0.935190.52
41DAP/39DAP0.695460.038
42DAP/41DAP1.130690.886
43DAP/42DAP0.888980.157
47DAP/43DAP1.065881
52DAP/47DAP1.123790.676
57DAP/52DAP1.585010.129
57DAP/7DAP1.795921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.092510.545
17DAP/reference1.024161
27DAP/reference1.08770.371
39DAP/reference1.174060.007
41DAP/reference1.09770.43
42DAP/reference1.04710.233
43DAP/reference1.082020.289
47DAP/reference1.04080.659
52DAP/reference1.360310.046
57DAP/reference1.207080.04

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.920040.58
17DAP/reference1.327050.644
27DAP/reference2.016090.078
39DAP/reference0.986450.539
41DAP/reference1.269930.327
42DAP/reference1.116050.759
43DAP/reference1.240140.356
47DAP/reference1.268540.212
52DAP/reference1.510470.098
57DAP/reference1.132610.827

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.007481
17DAP/reference1.027350.934
27DAP/reference1.061040.216
39DAP/reference1.135830.353
41DAP/reference1.111080.125
42DAP/reference1.079550.5
43DAP/reference1.180920.445
47DAP/reference0.860530.348
52DAP/reference0.942050.65
57DAP/reference0.966690.444

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.936291
26DAP/20DAP1.201840.499
34DAP/26DAP1.118451
51DAP/34DAP0.9190.606
52DAP/51DAP1.248270.733
53DAP/52DAP0.871410.663
55DAP/53DAP1.152330.876
57DAP/55DAP0.961660.825
62DAP/57DAP1.767890.767
68DAP/62DAP0.666490.747
68DAP/14DAP0.62576N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.269071

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.124740.814
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.113940.493
IL2-6/WTpooled1.378380.395
IL7-5/WTpooled0.743371
IL7-3/WTpooled0.974921
IL12-4/WTpooled0.934350.71
IL1-4/WTpooled0.963420.562
WT/WTpooled1.032481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.767680.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.180260.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.909N/A
DC3000/delta hrp 24h1.200840.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.51105N/A
DC3000 delta B/DC3000 delta AB0.665460.297

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.994071
Var 0h0.874640.457
Var 12h I row2-row11.065920.443
Var 12h NI row2-row10.901490.82
Var 36h I row2-row10.927570.805
Var 36h NI row2-row11.10111
Var 60h I row2-row10.977990.952
Var 60h NI row2-row11.150580.691
Time course 0hI-0hNI0.91340.338
Time course 12hI-12hNI0.987860.953
Time course 36hI-36hNI0.861480.084
Time course 60hI-60hNI0.373140.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.910911

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.065420.587

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.94710.503