Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-8.4.14.11

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.07154	0.77
27DAP/17DAP	0.9146	0.801
39DAP/27DAP	1.84199	0.078
41DAP/39DAP	1.90687	0.323
42DAP/41DAP	3.08146	0.023
43DAP/42DAP	1.56136	0.763
47DAP/43DAP	1.50316	0.361
52DAP/47DAP	0.56275	0.066
57DAP/52DAP	1.27204	0.89

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.69873	0.052
17DAP/reference	0.77048	0.015
27DAP/reference	0.75539	0.014
39DAP/reference	1.03732	0.771
41DAP/reference	0.92744	0.341
42DAP/reference	1.17795	0.005
43DAP/reference	2.11218	0.007
47DAP/reference	2.89121	0.001
52DAP/reference	1.54359	0.033
57DAP/reference	1.72742	0.01

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.98047	0.732
27DAP/17DAP	1.027	0.969
39DAP/27DAP	1.52372	0.067
41DAP/39DAP	0.66081	0.021
42DAP/41DAP	1.46038	0.005
43DAP/42DAP	2.10165	0.013
47DAP/43DAP	1.1929	0.078
52DAP/47DAP	0.96258	0.884
57DAP/52DAP	0.73467	0.104
57DAP/7DAP	2.5642	0.204

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.7152	0.073
17DAP/reference	0.71106	0.018
27DAP/reference	1.04225	0.974
39DAP/reference	0.72901	0.011
41DAP/reference	0.69635	0.012
42DAP/reference	0.79055	0.011
43DAP/reference	0.65419	0.016
47DAP/reference	0.77164	0.05
52DAP/reference	0.5914	0.013
57DAP/reference	0.56213	0.006

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.71717	0.01
17DAP/reference	0.67216	0.004
27DAP/reference	0.75756	0.03
39DAP/reference	0.70485	0.045
41DAP/reference	0.65503	0.018
42DAP/reference	0.92147	0.321
43DAP/reference	1.14597	0.396
47DAP/reference	1.0729	0.388
52DAP/reference	0.51344	0.004
57DAP/reference	0.67591	0.023

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.6349	0.023
17DAP/reference	0.75454	0.121
27DAP/reference	0.59006	0.031
39DAP/reference	0.66564	0.009
41DAP/reference	0.7906	0.032
42DAP/reference	1.57399	0.014
43DAP/reference	1.5306	0.014
47DAP/reference	1.99498	0.006
52DAP/reference	1.36127	0.067
57DAP/reference	1.06818	0.531

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.97764	1
26DAP/20DAP	0.65684	0.244
34DAP/26DAP	0.85276	N/A
51DAP/34DAP	1.84435	0.037
52DAP/51DAP	0.7787	0.151
53DAP/52DAP	2.29949	0.03
55DAP/53DAP	1.05211	0.712
57DAP/55DAP	1.00056	0.94
62DAP/57DAP	0.63745	0.028
68DAP/62DAP	1.17217	0.85
68DAP/14DAP	0.84212	0.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	4.84604	0.019

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.84786	0.343
Mature Green Tomato/Ripe Tomato	0.16161	0.016
Immature Eggplant/Mature Eggplant	3.16666	0.05
Ripe Pepper/Ripe Tomato	0.22906	0.224
Mature Eggplant/Ripe Tomato	0.13367	0.234

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.35767	0.536
1-1-2/M82	1.32113	1
12-2/M82	4.69331	1
12-4/M82	1.54571	1
1-3/M82	1.27609	0.248
2-1-1/M82	1.12142	0.689
2-1/M82	0.97862	1
2-6/M82	1.07925	0.594
3-2/M82	1.11679	0.84
4-1-1/M82	1.05475	1
4-1/M82	2.15244	0.853
4-3-2/M82	1.49186	0.508
4-3/M82	0.95747	0.72
5-3/M82	0.96961	1
6-2/M82	1.03669	1
6-3/M82	1.03243	1
7-1/M82	0.99667	1
7-2/M82	1.15243	0.385
9-3-2/M82	1.37463	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.81604	0.321
IL2-6/WTpooled	0.8128	0.358
IL7-5/WTpooled	1.37886	0.792
IL7-3/WTpooled	0.99645	1
IL12-4/WTpooled	1.08523	0.785
IL1-4/WTpooled	1.03904	1
WT/WTpooled	0.94732	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.40122	0.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.94226	1
DC3000/delta hrp 6h	1.33897	0.392
DC3000/delta hrp 12h	0.92767	1
DC3000/delta hrp 24h	1.10029	0.322

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.21098	1
Exp 36h	1.21222	0.693
Exp 60h	1.1949	0.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.10316	1
Var 0h	0.78948	0.289
Var 12h I row2-row1	1.06217	0.348
Var 12h NI row2-row1	0.97518	1
Var 36h I row2-row1	1.06448	0.305
Var 36h NI row2-row1	0.90823	0.225
Var 60h I row2-row1	1.10198	1
Var 60h NI row2-row1	0.93025	0.932
Time course 0hI-0hNI	1.00465	1
Time course 12hI-12hNI	1.05433	0.724
Time course 36hI-36hNI	1.31073	0.013
Time course 60hI-60hNI	2.03668	0.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.6182	0.32
transgenic ySAMdc/azygous control (breaker)	1.108	0.248
transgenic ySAMdc/azygous control (red)	1.15044	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.94086	0.295

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.45938	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.85763	1
Manapal/WT (break)	0.98041	1
Manapal/WT (red)	0.50286	0.229