TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-8.4.19.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.852430.389
27DAP/17DAP1.261050.833
39DAP/27DAP0.94150.663
41DAP/39DAP1.120320.701
42DAP/41DAP1.112110.962
43DAP/42DAP1.014790.937
47DAP/43DAP1.222280.513
52DAP/47DAP1.023120.746
57DAP/52DAP1.540990.839

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.829140.115
17DAP/reference0.924110.18
27DAP/reference1.07240.487
39DAP/reference0.948970.228
41DAP/reference0.803730.154
42DAP/reference0.925180.041
43DAP/reference0.863860.118
47DAP/reference1.001630.764
52DAP/reference0.885160.128
57DAP/reference1.002360.736

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.401960.07
27DAP/17DAP1.753990.025
39DAP/27DAP1.075170.654
41DAP/39DAP0.839820.333
42DAP/41DAP1.06271
43DAP/42DAP0.948660.576
47DAP/43DAP0.940050.823
52DAP/47DAP1.448380.234
57DAP/52DAP1.106110.507
57DAP/7DAP2.935680.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.019261
17DAP/reference0.897380.049
27DAP/reference0.901780.048
39DAP/reference0.954070.23
41DAP/reference0.965970.431
42DAP/reference0.892370.09
43DAP/reference0.94620.23
47DAP/reference1.11310.421
52DAP/reference1.09580.308
57DAP/reference1.004730.748

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.776950.031
17DAP/reference0.723910.007
27DAP/reference0.615440.008
39DAP/reference0.68270.022
41DAP/reference0.777510.032
42DAP/reference0.860660.135
43DAP/reference0.781250.084
47DAP/reference0.871620.021
52DAP/reference0.874360.04
57DAP/reference0.745270.005

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.908140.054
17DAP/reference0.876090.231
27DAP/reference1.090861
39DAP/reference0.874010.008
41DAP/reference0.962840.459
42DAP/reference0.882880.172
43DAP/reference0.802010.12
47DAP/reference1.031130.82
52DAP/reference0.982220.704
57DAP/reference0.857910.165

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.127410.966
26DAP/20DAP1.857750.102
34DAP/26DAP1.151250.819
51DAP/34DAP3.309630.022
52DAP/51DAP1.031780.939
53DAP/52DAP1.544520.041
55DAP/53DAP0.762390.077
57DAP/55DAP0.564390.026
62DAP/57DAP0.920430.681
68DAP/62DAP1.731180.206
68DAP/14DAP2.411830.027

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.185130.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.45120.083
Mature Green Tomato/Ripe Tomato1.233920.881
Immature Eggplant/Mature Eggplant2.95140.05
Ripe Pepper/Ripe Tomato6.40750.258
Mature Eggplant/Ripe Tomato0.306230.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.988440.961
1-1-2/M821.127791
12-2/M821.151061
12-4/M821.00506N/A
1-3/M821.041821
2-1-1/M821.30909N/A
2-1/M821.698940.345
2-6/M820.847411
3-2/M820.42643N/A
4-1-1/M821.141891
4-1/M820.59415N/A
4-3-2/M820.7909N/A
4-3/M821.867241
5-3/M821.123520.572
6-2/M820.964491
6-3/M820.890091
7-1/M820.963991
7-2/M821.129781
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.873031
IL2-6/WTpooled1.007511
IL7-5/WTpooled0.54781
IL7-3/WTpooled0.857840.294
IL12-4/WTpooled0.905151
IL1-4/WTpooled0.923160.699
WT/WTpooled1.13881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.192941

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.912141
DC3000/delta hrp 6h0.843950.95
DC3000/delta hrp 12h1.014891
DC3000/delta hrp 24h1.395420.264

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.09218N/A
DC3000 delta B/DC3000 delta AB1.419480.167

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.251241
Exp 36h1.360161
Exp 60h1.09141

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.000451
Var 0h2.163340.936
Var 12h I row2-row11.02791N/A
Var 12h NI row2-row11.071781
Var 36h I row2-row11.219350.41
Var 36h NI row2-row11.505580.253
Var 60h I row2-row10.65840.285
Var 60h NI row2-row11.606310.361
Time course 0hI-0hNI1.052290.867
Time course 12hI-12hNI0.974590.893
Time course 36hI-36hNI1.025881
Time course 60hI-60hNI1.002130.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.13160.748
transgenic ySAMdc/azygous control (breaker)0.761720.132
transgenic ySAMdc/azygous control (red)0.968751

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.827440.042

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.239851

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.414010.14
Manapal/WT (break)0.816711
Manapal/WT (red)0.943210.607